Detailed information    

insolico Bioinformatically predicted

Overview

Name   recP/tkt   Type   Machinery gene
Locus tag   NF668_RS08930 Genome accession   NZ_CP098925
Coordinates   2059998..2062025 (-) Length   675 a.a.
NCBI ID   WP_234233748.1    Uniprot ID   -
Organism   Porphyromonas gingivalis strain grey     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2054998..2067025
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NF668_RS08915 (NF668_08900) - 2056495..2058774 (+) 2280 WP_043894388.1 NADP-dependent malic enzyme -
  NF668_RS08920 (NF668_08905) - 2059002..2059439 (-) 438 WP_021665887.1 hypothetical protein -
  NF668_RS08925 (NF668_08910) rpiB 2059474..2059911 (-) 438 WP_301557029.1 ribose 5-phosphate isomerase B -
  NF668_RS08930 (NF668_08915) recP/tkt 2059998..2062025 (-) 2028 WP_234233748.1 transketolase Machinery gene
  NF668_RS08935 (NF668_08920) - 2062469..2064289 (+) 1821 WP_088477107.1 alpha-L-fucosidase -
  NF668_RS08940 (NF668_08925) - 2064426..2065556 (+) 1131 WP_301557030.1 aminotransferase class V-fold PLP-dependent enzyme -
  NF668_RS08945 (NF668_08930) - 2065540..2065764 (+) 225 WP_005875396.1 DUF3343 domain-containing protein -
  NF668_RS08950 (NF668_08935) selD 2065761..2066807 (+) 1047 WP_021663596.1 selenide, water dikinase SelD -

Sequence

Protein


Download         Length: 675 a.a.        Molecular weight: 73796.00 Da        Isoelectric Point: 5.4197

>NTDB_id=601422 NF668_RS08930 WP_234233748.1 2059998..2062025(-) (recP/tkt) [Porphyromonas gingivalis strain grey]
MNDKKLMNKAADNIRVLAAAMVEKAKSGHPGGAMGGADFVNVLFSEYLIFDPKNPQWAGRDRFFLDPGHMSPMLYAQLAL
TGKYSMDDLKAFRQWGSITPGHPEVDVMHGVENTSGPLGQGHTYAVGAAIAAKFLAHRFGWMMSQTIYAYISDGGIQEEV
SQGAGRIAGHLGLNNLIMFYDSNDVQLSTTVKEVASEDVAMKYRAWGWKVIEIAGNDADEIRKALTEAKGEGERPTLIIG
HTLMGKGAVGEDGSSYENMVSTHGQPLSAAGASFAETVKNLGGNPEEPFAIFPEVREMYAARLAELEQIMAERREEEERW
RSTHPDLAAKFDAWFAGQTPQIDWKAIEQKPNQATRSASATVLGTLAGKVENMIVTSADLSNSDKTDGFLKKTHAMKKGD
FSGAFLQMGVSELTMACLCIGMALHGGVIPACGTFFVFSDYMKPAVRMAALMELPVKFIWTHDAFRVGEDGPTHEPVEQE
AQIRLMEKLHNHSGRRSMLVLRPADVQETTVAWKMAMENTHTPTALILSRQNITDLPANDSRYEEALQAEKGAYIVNTDQ
NIEVVLLASGSEVSTLVEGAELLRKRGVKLRIVSVPSEGLFRSQSAEYQEEVLPIGIRRFGLTAGLPVNLEGLVGESGAV
WGLNSFGFSAPYKVLDEKLGFTAENVYEQVLKILH

Nucleotide


Download         Length: 2028 bp        

>NTDB_id=601422 NF668_RS08930 WP_234233748.1 2059998..2062025(-) (recP/tkt) [Porphyromonas gingivalis strain grey]
ATGAATGACAAAAAGCTGATGAACAAGGCTGCGGACAATATTCGAGTATTGGCCGCTGCAATGGTGGAAAAAGCCAAAAG
CGGTCACCCGGGCGGAGCCATGGGCGGAGCGGACTTTGTAAACGTACTCTTCTCCGAGTATCTGATCTTTGACCCGAAGA
ACCCGCAATGGGCCGGTCGCGATCGCTTCTTCTTGGATCCGGGACATATGTCCCCGATGCTGTATGCTCAGCTGGCATTG
ACGGGCAAGTACTCCATGGATGACCTCAAAGCATTCCGCCAATGGGGCAGCATCACACCCGGACACCCCGAAGTAGATGT
CATGCACGGAGTGGAGAACACATCCGGCCCCTTGGGACAAGGCCACACCTATGCTGTCGGTGCAGCCATCGCAGCCAAAT
TCCTCGCTCATCGCTTCGGCTGGATGATGAGCCAAACGATCTATGCCTACATTTCCGATGGAGGAATACAGGAGGAAGTA
TCACAAGGAGCCGGCCGAATCGCCGGACACCTTGGGCTGAACAATCTGATTATGTTCTACGACTCGAACGACGTACAGCT
TTCTACGACAGTGAAAGAGGTGGCAAGCGAAGACGTAGCCATGAAATATCGTGCATGGGGTTGGAAGGTAATAGAGATTG
CAGGTAACGATGCGGATGAAATTCGCAAGGCCCTGACCGAAGCCAAGGGAGAGGGCGAGCGTCCCACACTTATCATCGGG
CACACCCTTATGGGCAAAGGTGCCGTAGGCGAGGATGGCAGTTCGTATGAGAATATGGTGAGCACGCACGGACAGCCGCT
ATCGGCTGCCGGAGCATCATTCGCCGAAACGGTCAAGAACCTCGGAGGCAATCCCGAAGAGCCGTTCGCCATCTTCCCCG
AAGTTCGGGAAATGTATGCCGCTCGCTTGGCAGAACTGGAGCAGATCATGGCAGAGCGTCGCGAAGAAGAGGAACGTTGG
CGCAGCACCCATCCTGATTTGGCAGCCAAGTTCGATGCGTGGTTTGCCGGTCAAACGCCCCAAATCGACTGGAAAGCCAT
AGAGCAGAAACCCAATCAGGCTACCCGCTCCGCTTCTGCCACCGTGTTGGGTACTCTTGCCGGAAAAGTGGAGAATATGA
TTGTAACCTCTGCCGACCTTTCCAATTCAGACAAGACCGATGGCTTCTTGAAGAAAACCCACGCCATGAAGAAAGGAGAT
TTCAGTGGAGCATTCCTGCAGATGGGTGTATCGGAGCTGACCATGGCCTGCCTCTGTATCGGTATGGCTCTTCATGGAGG
CGTCATTCCGGCTTGCGGTACTTTCTTCGTATTTTCCGACTACATGAAACCGGCCGTTCGTATGGCTGCCCTGATGGAAT
TGCCCGTCAAGTTTATCTGGACGCACGATGCTTTCCGTGTGGGCGAGGATGGTCCTACTCACGAACCGGTGGAACAGGAG
GCGCAAATTCGCCTGATGGAGAAGTTGCACAATCACAGCGGCCGTCGCTCCATGCTGGTCCTTCGTCCGGCCGATGTGCA
AGAGACTACCGTAGCCTGGAAGATGGCTATGGAGAATACGCATACTCCTACAGCTCTCATCCTTTCGCGTCAGAATATCA
CCGATCTGCCTGCTAACGACAGTCGGTACGAAGAAGCGTTGCAGGCTGAAAAGGGAGCTTATATCGTCAATACGGATCAG
AATATCGAAGTAGTTCTCCTGGCCAGCGGATCTGAGGTGTCCACATTGGTCGAGGGTGCAGAACTGCTGCGCAAACGCGG
TGTAAAACTTCGTATCGTGTCGGTACCTTCCGAAGGGCTTTTCCGTTCGCAGAGTGCCGAGTATCAGGAGGAAGTGCTTC
CCATCGGTATCAGACGTTTCGGTCTGACAGCCGGATTGCCCGTCAACCTGGAAGGCCTTGTGGGTGAAAGCGGTGCCGTC
TGGGGATTGAACTCTTTCGGATTCTCCGCTCCCTATAAGGTGCTGGACGAGAAACTCGGCTTTACGGCAGAGAATGTGTA
CGAACAAGTGTTGAAAATACTCCACTGA

Domains

Predicted by InterProScan.

Transketolase, pyrimidine binding domain (Transket_pyr)

(354-533)

Transketolase, thiamine diphosphate binding domain (Transketolase_N)

(8-340)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recP/tkt Streptococcus pneumoniae TIGR4

38.54

100

0.391