Detailed information    

insolico Bioinformatically predicted

Overview

Name   cytR   Type   Regulator
Locus tag   K6806_RS01225 Genome accession   NZ_CP082319
Coordinates   269281..270288 (-) Length   335 a.a.
NCBI ID   WP_005379543.1    Uniprot ID   -
Organism   Vibrio alginolyticus strain XWV9     
Function   promote competence gene expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 264281..275288
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K6806_RS01205 (K6806_01205) - 264774..265691 (-) 918 WP_213891727.1 1,4-dihydroxy-2-naphthoate polyprenyltransferase -
  K6806_RS01210 (K6806_01210) hslU 266483..267814 (-) 1332 WP_025768349.1 HslU--HslV peptidase ATPase subunit -
  K6806_RS01215 (K6806_01215) hslV 267838..268389 (-) 552 WP_005383176.1 ATP-dependent protease subunit HslV -
  K6806_RS01220 (K6806_01220) ftsN 268505..269053 (-) 549 WP_047101882.1 cell division protein FtsN -
  K6806_RS01225 (K6806_01225) cytR 269281..270288 (-) 1008 WP_005379543.1 DNA-binding transcriptional regulator CytR Regulator
  K6806_RS01230 (K6806_01230) priA 270613..272817 (-) 2205 WP_053349704.1 primosomal protein N' -
  K6806_RS01235 (K6806_01235) rpmE 273114..273335 (+) 222 WP_005379546.1 50S ribosomal protein L31 -
  K6806_RS01240 (K6806_01240) rpsJ 273791..274102 (+) 312 WP_004410492.1 30S ribosomal protein S10 -
  K6806_RS01245 (K6806_01245) rplC 274117..274746 (+) 630 WP_005379555.1 50S ribosomal protein L3 -

Sequence

Protein


Download         Length: 335 a.a.        Molecular weight: 36892.42 Da        Isoelectric Point: 6.2447

>NTDB_id=601408 K6806_RS01225 WP_005379543.1 269281..270288(-) (cytR) [Vibrio alginolyticus strain XWV9]
MATMKDVAQLAGVSTATVSRALMNPEKVSSSTRKRVEDAVLEAGYSPNSLARNLRRNESKTIVTIVPDICDPYFSEIIRG
IEDAAMEHGYLVLLGDSGQQKKRESSFVNLVFTKQADGMLLLGTDLPFDVSKPEQKNLPPMVMACEFAPELELPTVHIDN
LTSAFEAVNYLTQLGHKRIAQISGPDTAILCQFRQQGYQQALRRAGINKDPQYSVITEFSFDGGAKAVRKLLELPEPPTA
IFCHCDTMAIGAIQEAKKLGLRVPQDLSVVGFDDINFAQYCDPPLTTISQPRYEIGRQAMLMMLEMLKGHDVHSGSRLLE
TNLVIRGSAAPPQRP

Nucleotide


Download         Length: 1008 bp        

>NTDB_id=601408 K6806_RS01225 WP_005379543.1 269281..270288(-) (cytR) [Vibrio alginolyticus strain XWV9]
ATGGCGACAATGAAGGATGTTGCCCAGCTTGCGGGAGTGTCTACGGCTACGGTATCTCGAGCCTTAATGAATCCAGAGAA
AGTCTCTTCTTCTACAAGAAAGAGAGTAGAAGATGCCGTACTTGAAGCGGGTTATTCTCCAAACTCATTAGCGCGTAACT
TACGTAGAAACGAATCAAAAACCATTGTTACTATCGTTCCCGACATCTGTGATCCTTATTTTTCTGAAATTATTCGCGGT
ATTGAAGATGCAGCCATGGAACATGGCTATCTAGTCCTGTTGGGTGATAGCGGACAACAGAAGAAACGCGAAAGCTCTTT
CGTTAACCTCGTATTTACTAAGCAGGCAGATGGAATGCTACTGCTTGGTACAGATCTACCATTCGATGTCAGTAAGCCAG
AGCAAAAGAACTTACCTCCGATGGTAATGGCGTGTGAATTTGCGCCTGAACTCGAGCTTCCGACAGTACATATTGATAAC
CTGACCTCAGCATTTGAAGCGGTGAATTACCTGACCCAATTAGGTCATAAACGCATTGCTCAAATCTCTGGACCAGATAC
AGCAATATTGTGTCAATTCCGCCAGCAAGGCTACCAACAAGCCCTGCGCCGTGCCGGCATCAATAAAGATCCGCAATATA
GTGTCATTACTGAGTTCTCTTTTGATGGCGGAGCAAAAGCCGTTCGTAAACTGCTCGAATTGCCAGAACCACCAACGGCT
ATTTTCTGTCACTGTGACACAATGGCCATCGGCGCAATTCAAGAAGCGAAAAAGCTTGGCTTACGAGTACCGCAAGATCT
CTCTGTTGTGGGCTTTGATGACATTAACTTCGCTCAGTACTGCGATCCACCGTTGACCACCATCTCTCAACCTCGCTATG
AGATTGGTCGACAAGCGATGCTAATGATGCTCGAGATGTTAAAAGGCCACGACGTGCATTCAGGCTCACGTCTGCTTGAA
ACTAATCTCGTCATTCGTGGAAGTGCAGCGCCACCACAGCGCCCTTAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, lacI family (LacI)

(3-48)

Periplasmic binding protein-like domain (Peripla_BP_3)

(168-328)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cytR Vibrio parahaemolyticus RIMD 2210633

98.204

99.701

0.979
  cytR Vibrio cholerae C6706

89.521

99.701

0.893