Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   K6754_RS09500 Genome accession   NZ_CP082317
Coordinates   1974917..1976338 (+) Length   473 a.a.
NCBI ID   WP_085569561.1    Uniprot ID   -
Organism   Vibrio alginolyticus strain SXV3     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1969917..1981338
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K6754_RS09480 (K6754_09430) - 1970397..1971203 (-) 807 WP_054729864.1 adenosylcobinamide-GDP ribazoletransferase -
  K6754_RS09485 (K6754_09435) cobT 1971203..1972246 (-) 1044 WP_213909864.1 nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase -
  K6754_RS09490 (K6754_09440) - 1972496..1973185 (+) 690 WP_025766774.1 NAD(P)H-binding protein -
  K6754_RS09495 (K6754_09445) - 1973386..1974759 (+) 1374 WP_238974698.1 L-cystine transporter -
  K6754_RS09500 (K6754_09450) sbcB 1974917..1976338 (+) 1422 WP_085569561.1 exodeoxyribonuclease I Machinery gene
  K6754_RS09505 (K6754_09455) - 1976394..1976768 (+) 375 WP_005377887.1 CidA/LrgA family protein -
  K6754_RS09510 (K6754_09460) - 1976770..1977447 (+) 678 WP_005377888.1 LrgB family protein -
  K6754_RS09515 (K6754_09465) cdd 1977879..1978766 (+) 888 WP_238974700.1 cytidine deaminase -
  K6754_RS09520 (K6754_09470) purT 1978910..1980085 (+) 1176 WP_005385459.1 formate-dependent phosphoribosylglycinamide formyltransferase -
  K6754_RS09525 (K6754_09475) - 1980158..1980808 (-) 651 WP_149191885.1 thiopurine S-methyltransferase -

Sequence

Protein


Download         Length: 473 a.a.        Molecular weight: 54388.58 Da        Isoelectric Point: 4.8633

>NTDB_id=601382 K6754_RS09500 WP_085569561.1 1974917..1976338(+) (sbcB) [Vibrio alginolyticus strain SXV3]
MHQDNQPTFFFFDYETWGTNPAKDRPSQFAGVRTDENFNIIGEPLVMYCQPPADYLPSPEAALITGITPQKTVQEGLSEP
EFIAKIHAELAKPNTTSLGYNSIRFDDEVTRYTCYRNFIDPYAWSWQNGNSRWDLLDVLRACHALRPEGVEWPENEDGFT
SFKLEHLSVANGIEHSNAHDAMADVVATIEMAKKVKAAQPKLFDYFFSMRQKRKLNDLVDIVNMTPLMHVSGMLGRECQY
TSWIVPVAWHPTNNNAVITIDLAKDPQPILELSAEELHERLYTKREDLGELLPVPVKLVHLNKCPILAPAKTLTAENAES
IGIDRQQCLANLALLRQHPEIREKLISLFSVERKFDKSDDVDTQLYDGFFSPADRAAMDIIRETDPNNLAALDIEFDDKR
IKPLLFRYRARNFPGTLDEQEQRRWALHCREVFESQIEEYMLNLENLVHEHESDEKKIAILKSVYRYVESLAS

Nucleotide


Download         Length: 1422 bp        

>NTDB_id=601382 K6754_RS09500 WP_085569561.1 1974917..1976338(+) (sbcB) [Vibrio alginolyticus strain SXV3]
ATGCACCAAGATAATCAGCCCACTTTTTTCTTCTTTGATTATGAGACATGGGGAACCAACCCCGCGAAAGATCGCCCAAG
CCAGTTCGCTGGTGTTCGTACAGATGAAAACTTTAATATCATCGGCGAGCCTTTAGTCATGTACTGTCAACCACCGGCTG
ATTATCTTCCGTCTCCTGAAGCTGCGCTTATTACTGGTATTACTCCGCAAAAAACGGTGCAAGAGGGCCTTTCTGAGCCA
GAGTTTATCGCTAAGATTCACGCTGAACTCGCAAAACCAAATACTACCAGTTTAGGCTACAACAGCATTCGCTTTGATGA
CGAAGTGACCCGTTATACTTGTTATCGCAACTTCATCGATCCATACGCATGGAGTTGGCAAAACGGTAACTCACGTTGGG
ATTTACTCGATGTACTACGCGCGTGCCATGCCCTTCGCCCAGAAGGCGTAGAATGGCCAGAAAACGAAGATGGCTTCACT
AGCTTTAAATTAGAACACTTGTCTGTGGCTAACGGCATAGAACATAGTAACGCGCACGATGCCATGGCAGATGTGGTTGC
GACTATCGAAATGGCAAAGAAAGTAAAAGCAGCGCAACCAAAATTGTTTGATTACTTTTTTTCTATGCGCCAAAAGCGCA
AGCTCAATGATTTAGTCGACATCGTCAACATGACACCGTTGATGCACGTTTCAGGCATGCTAGGGCGCGAATGCCAGTAC
ACTAGCTGGATTGTGCCTGTTGCTTGGCATCCAACCAATAATAACGCCGTTATCACCATCGATTTAGCGAAAGACCCTCA
ACCTATTCTTGAGCTATCCGCAGAAGAGCTGCACGAAAGACTCTACACTAAGCGCGAAGATCTTGGTGAATTGCTACCAG
TGCCAGTTAAACTAGTTCATTTGAACAAATGCCCTATTCTCGCCCCTGCAAAAACGTTAACGGCTGAAAATGCGGAGTCT
ATTGGCATTGATCGCCAACAATGTCTCGCTAATCTCGCTTTGTTGCGCCAACATCCTGAAATTAGAGAAAAGCTGATTAG
CCTCTTTTCCGTCGAGCGTAAATTCGATAAAAGTGATGACGTCGATACACAACTTTACGACGGGTTCTTTTCTCCGGCTG
ATCGCGCAGCTATGGATATCATTCGCGAAACCGATCCGAATAATCTTGCCGCATTGGACATTGAATTTGATGACAAGCGC
ATTAAACCTCTATTGTTCCGCTATCGTGCGCGTAACTTCCCAGGCACATTAGACGAGCAAGAACAAAGACGCTGGGCATT
ACACTGTCGAGAAGTGTTTGAAAGCCAAATTGAAGAGTACATGCTGAATTTAGAAAACTTAGTTCACGAACATGAAAGTG
ACGAAAAGAAGATTGCGATATTAAAATCCGTGTACCGTTATGTAGAGAGCTTAGCTTCCTAA

Domains

Predicted by InterproScan.

Exonuclease C-terminal (Exonuc_X-T_C)

(210-469)

Exonuclease (RNase_T)

(11-190)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

79.493

100

0.795