Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxO   Type   Regulator
Locus tag   K6754_RS05060 Genome accession   NZ_CP082317
Coordinates   1066454..1067860 (+) Length   468 a.a.
NCBI ID   WP_005380768.1    Uniprot ID   A0AAW9BFV3
Organism   Vibrio alginolyticus strain SXV3     
Function   promote HapR production (predicted from homology)   
Competence regulation

Genomic Context

Location: 1061454..1072860
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K6754_RS05055 (K6754_05050) uvrB 1064132..1066162 (+) 2031 WP_017636056.1 excinuclease ABC subunit UvrB -
  K6754_RS05060 (K6754_05055) luxO 1066454..1067860 (+) 1407 WP_005380768.1 quorum-sensing sigma-54 dependent transcriptional regulator LuxO Regulator
  K6754_RS05065 (K6754_05060) luxU 1067857..1068201 (+) 345 WP_047103451.1 quorum-sensing phosphorelay protein LuxU -
  K6754_RS05070 (K6754_05065) - 1068340..1069236 (-) 897 WP_025767209.1 YvcK family protein -
  K6754_RS05075 (K6754_05070) moaA 1069535..1070524 (+) 990 WP_047103449.1 GTP 3',8-cyclase MoaA -
  K6754_RS05080 (K6754_05075) moaB 1070626..1071138 (+) 513 WP_005388935.1 molybdenum cofactor biosynthesis protein B -
  K6754_RS05085 (K6754_05080) moaC 1071165..1071644 (+) 480 WP_005380779.1 cyclic pyranopterin monophosphate synthase MoaC -
  K6754_RS05090 (K6754_05085) moaD 1071641..1071898 (+) 258 WP_005388938.1 molybdopterin synthase sulfur carrier subunit -
  K6754_RS05095 (K6754_05090) moaE 1071900..1072355 (+) 456 WP_017821374.1 molybdopterin synthase catalytic subunit MoaE -

Sequence

Protein


Download         Length: 468 a.a.        Molecular weight: 52094.70 Da        Isoelectric Point: 6.2547

>NTDB_id=601379 K6754_RS05060 WP_005380768.1 1066454..1067860(+) (luxO) [Vibrio alginolyticus strain SXV3]
MQQKPEGPKSRYLLMVEDTASVAALYRSYLTPLGIDINIVGTGRDAIESLNHRIPDLILLDLRLPDMTGMDVLHAVKKSH
PDVPIIFMTAHGSIDTAVEAMRHGSQDFLIKPCEADRLRVTVNNAIRKATKLKNEADNPGNQSYQGFIGSSQTMQQVYRT
IDSAASSKASIFITGESGTGKEVCAEAIHAASKRGDKPFIAINCAAIPKDLIESELFGHVKGAFTGAANDRQGAAELADG
GTLFLDELCEMDLDLQTKLLRFIQTGTFQKVGSSKMKSVDVRFVCATNRDPWKEVQEGRFREDLYYRLYVIPLHLPPLRE
RGEDVIEIAYSLLGYMSHEEGKSFIRFAPDVIERFNSYEWPGNVRQLQNVLRNIVVLNNGKEITLDMLPPPLNQPLDRPS
SVAKLIEPKAMTASEIMPLWMTEKMAIEQAIEACDGNIPRAAGYLDVSPSTIYRKLQAWNGKEERQKV

Nucleotide


Download         Length: 1407 bp        

>NTDB_id=601379 K6754_RS05060 WP_005380768.1 1066454..1067860(+) (luxO) [Vibrio alginolyticus strain SXV3]
ATGCAACAAAAACCCGAAGGCCCAAAGTCTCGTTACCTTTTAATGGTCGAGGACACCGCATCTGTTGCGGCTCTGTACCG
CTCATACCTGACACCGCTTGGCATAGATATCAATATTGTCGGCACAGGTAGGGATGCCATTGAGAGCCTAAATCATCGAA
TTCCAGATCTTATTTTACTCGATCTCCGTCTGCCAGATATGACGGGGATGGACGTTTTACATGCCGTTAAAAAGAGTCAT
CCCGACGTACCTATAATTTTTATGACCGCTCACGGTTCTATCGATACCGCTGTCGAGGCCATGCGTCATGGCTCACAAGA
CTTTCTAATTAAACCGTGTGAAGCGGACCGTTTACGTGTCACGGTTAACAATGCAATTCGTAAAGCGACCAAGCTAAAAA
ATGAAGCCGATAATCCAGGCAATCAGAGCTATCAGGGGTTTATCGGCAGTAGCCAAACCATGCAGCAGGTTTACCGTACG
ATAGATTCCGCGGCGAGCAGTAAAGCGAGTATTTTTATCACTGGTGAAAGTGGTACTGGTAAAGAGGTATGTGCCGAGGC
AATCCACGCAGCAAGTAAACGTGGTGACAAACCTTTTATTGCAATTAACTGTGCTGCAATTCCAAAAGATTTGATTGAGA
GTGAACTGTTTGGTCACGTAAAAGGGGCCTTTACTGGCGCTGCGAATGATCGTCAAGGGGCGGCTGAGTTAGCGGATGGC
GGCACACTTTTTCTAGATGAGCTTTGTGAGATGGACTTGGATTTACAAACCAAGTTGCTACGATTTATTCAAACGGGCAC
ATTCCAAAAAGTGGGTTCCTCAAAAATGAAGAGCGTGGATGTGCGCTTTGTGTGTGCCACTAACCGTGATCCCTGGAAAG
AGGTACAAGAAGGTCGATTCCGTGAAGATTTGTACTATCGTTTGTATGTCATTCCTTTGCATTTACCGCCTTTACGCGAA
CGAGGCGAAGATGTTATTGAAATTGCATACTCACTGTTAGGTTACATGTCACACGAAGAAGGAAAAAGCTTCATACGTTT
TGCGCCTGATGTCATCGAGCGATTCAACAGCTATGAGTGGCCGGGTAACGTTCGTCAGTTACAAAACGTGCTACGCAATA
TCGTTGTTCTAAACAACGGTAAAGAGATTACGTTGGACATGTTACCGCCCCCGTTGAATCAACCGCTTGACCGTCCGTCG
TCTGTGGCTAAATTAATTGAGCCGAAAGCGATGACCGCATCTGAGATTATGCCATTATGGATGACGGAAAAAATGGCAAT
CGAGCAAGCGATTGAAGCATGTGATGGCAATATTCCTCGAGCGGCGGGATATCTTGATGTCAGTCCGTCGACGATTTACC
GCAAGTTACAGGCATGGAACGGCAAGGAAGAGCGGCAAAAAGTATGA

Domains

Predicted by InterproScan.

Sigma-54 interaction domain (Sigma54_activat)

(148-313)

Response regulator receiver domain (Response_reg)

(14-122)

Bacterial regulatory protein, Fis family (HTH_8)

(419-459)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxO Vibrio cholerae strain A1552

86.414

95.94

0.829