Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilH   Type   Machinery gene
Locus tag   NE424_RS16840 Genome accession   NZ_CP098795
Coordinates   3481488..3481850 (+) Length   120 a.a.
NCBI ID   WP_000101096.1    Uniprot ID   A0ABN3ANQ3
Organism   Acinetobacter baumannii strain VB280821     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3476488..3486850
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NE424_RS16825 (NE424_16825) - 3478982..3480100 (-) 1119 WP_001260821.1 efflux RND transporter periplasmic adaptor subunit -
  NE424_RS16830 (NE424_16830) - 3480160..3480798 (-) 639 WP_031965753.1 hypothetical protein -
  NE424_RS16835 (NE424_16835) pilG 3481081..3481464 (+) 384 WP_000389061.1 twitching motility response regulator PilG Regulator
  NE424_RS16840 (NE424_16840) pilH 3481488..3481850 (+) 363 WP_000101096.1 response regulator Machinery gene
  NE424_RS16845 (NE424_16845) - 3481911..3482447 (+) 537 WP_000729762.1 chemotaxis protein CheW -
  NE424_RS16850 (NE424_16850) - 3482494..3484572 (+) 2079 WP_000505927.1 methyl-accepting chemotaxis protein -

Sequence

Protein


Download         Length: 120 a.a.        Molecular weight: 13479.47 Da        Isoelectric Point: 4.9102

>NTDB_id=601355 NE424_RS16840 WP_000101096.1 3481488..3481850(+) (pilH) [Acinetobacter baumannii strain VB280821]
MARILIVDDSPTETFRFKEILTKHGYDVLEASNGADGVTLAKAEQPDLVLMDVVMPGVNGFQATRQITRDEDTKHIPVVI
VSTKDQATDRVWGKRQGAIDYLIKPIEEKQLIDVIKQFLN

Nucleotide


Download         Length: 363 bp        

>NTDB_id=601355 NE424_RS16840 WP_000101096.1 3481488..3481850(+) (pilH) [Acinetobacter baumannii strain VB280821]
ATGGCACGTATTCTCATTGTTGATGACTCACCAACAGAAACTTTTCGTTTTAAAGAAATCCTAACTAAGCATGGCTATGA
CGTACTTGAAGCATCTAACGGTGCAGATGGTGTGACTTTGGCAAAAGCTGAGCAGCCTGACTTGGTATTAATGGATGTAG
TCATGCCAGGTGTAAATGGTTTTCAGGCAACGCGCCAGATTACCCGTGATGAAGACACGAAGCATATTCCGGTGGTGATT
GTGAGTACTAAAGATCAGGCAACTGACCGAGTATGGGGTAAACGTCAAGGCGCAATCGATTACTTAATCAAGCCAATCGA
AGAAAAGCAATTAATTGATGTAATTAAACAATTTCTAAATTAA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(4-115)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilH Synechocystis sp. PCC 6803

39.496

99.167

0.392