Detailed information    

insolico Bioinformatically predicted

Overview

Name   cqsA   Type   Regulator
Locus tag   K6752_RS17400 Genome accession   NZ_CP082316
Coordinates   490110..491291 (-) Length   393 a.a.
NCBI ID   WP_005376522.1    Uniprot ID   -
Organism   Vibrio alginolyticus strain ZLV3     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 485110..496291
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K6752_RS17385 (K6752_17315) - 486342..486890 (+) 549 WP_005376525.1 GNAT family N-acetyltransferase -
  K6752_RS17390 (K6752_17320) - 486980..487597 (-) 618 WP_005376524.1 HAD family hydrolase -
  K6752_RS17395 (K6752_17325) cqsS 487961..490006 (+) 2046 WP_005376523.1 hybrid sensor histidine kinase/response regulator Regulator
  K6752_RS17400 (K6752_17330) cqsA 490110..491291 (-) 1182 WP_005376522.1 alpha-hydroxyketone-type quorum-sensing autoinducer synthase Regulator
  K6752_RS17405 (K6752_17335) ylqF 491629..492573 (-) 945 WP_005376521.1 ribosome biogenesis GTPase YlqF -

Sequence

Protein


Download         Length: 393 a.a.        Molecular weight: 43639.85 Da        Isoelectric Point: 6.3840

>NTDB_id=601355 K6752_RS17400 WP_005376522.1 490110..491291(-) (cqsA) [Vibrio alginolyticus strain ZLV3]
MSETIQSKPLPSFIEERLDFYIQDLIEPNENKKHLVLGKRPPCNAVVLQSNDYLALSHNKEIQNAHRDAISQHDDNVVMS
AIFLQDDESKPAFETQLASFVGMPSCLLSQSGWAANVGLLQTICAPNIPVYIDFFAHMSLWEGARIAGAQIHPFMHNNTS
HLRKQISRHGSGIIVVDSVYSTIGTIAPLRDIYEIAQEFDCGLVVDESHSLGTHGPQGAGILQGLGLTHKVDFITVSLAK
TFAYRAGAILGPEKLAKTLPFVAYPAIFSSTVLPQEIIRLEKTLDVIRKSDDKRDILFERAKSLAVGLKRIGFTIRSESQ
IISLECGNERNTERVRDFLEERNVYGAVFCRPATGRNKNIIRFSVNADMTAAEVDHVLTVCQQAFAHPDLEFV

Nucleotide


Download         Length: 1182 bp        

>NTDB_id=601355 K6752_RS17400 WP_005376522.1 490110..491291(-) (cqsA) [Vibrio alginolyticus strain ZLV3]
ATGAGTGAAACTATACAAAGCAAACCACTTCCCTCCTTTATCGAGGAACGCCTAGATTTTTATATTCAAGATCTAATCGA
ACCGAATGAGAACAAAAAACACCTTGTTCTTGGTAAACGCCCACCGTGTAATGCCGTTGTCCTGCAAAGCAATGATTACC
TTGCACTGTCTCATAATAAGGAGATTCAAAACGCGCATCGTGATGCGATTTCCCAGCACGATGACAACGTCGTGATGTCC
GCGATTTTCTTACAAGATGATGAATCGAAACCTGCATTTGAAACGCAACTAGCCAGTTTCGTTGGTATGCCTAGTTGTCT
ACTTTCTCAATCTGGTTGGGCTGCGAATGTCGGTTTATTGCAGACTATTTGTGCACCGAACATACCTGTGTACATTGATT
TCTTTGCACATATGTCTTTGTGGGAAGGCGCACGTATTGCCGGAGCACAAATTCATCCGTTCATGCATAACAACACCAGT
CACCTAAGAAAGCAGATTTCACGTCACGGTTCAGGGATCATTGTTGTGGATTCGGTTTACAGCACTATCGGGACCATCGC
TCCTCTACGTGATATCTACGAAATAGCACAGGAGTTTGACTGCGGCCTGGTTGTAGATGAATCACACTCTTTAGGTACAC
ACGGTCCACAAGGTGCGGGGATACTGCAGGGTCTTGGCTTAACTCATAAGGTAGATTTTATTACCGTTAGTCTTGCCAAG
ACATTTGCTTATCGTGCTGGCGCGATTTTAGGCCCAGAAAAACTGGCGAAGACGCTTCCGTTTGTGGCGTACCCTGCAAT
ATTTAGTTCTACCGTATTACCGCAAGAGATCATTCGGCTAGAGAAAACACTGGACGTCATAAGAAAATCAGATGATAAGC
GAGATATTCTGTTTGAAAGAGCCAAGTCTTTAGCCGTTGGTTTAAAACGCATTGGATTTACTATTCGCAGTGAATCACAA
ATTATCTCATTAGAATGCGGCAACGAGAGAAACACTGAGCGAGTCCGCGATTTTCTCGAAGAGCGAAATGTTTACGGCGC
AGTGTTTTGCCGCCCTGCAACTGGAAGGAACAAAAACATCATCCGTTTTTCAGTCAATGCCGACATGACAGCTGCTGAAG
TTGATCATGTACTCACTGTCTGCCAACAAGCATTTGCACACCCTGACTTAGAGTTTGTATAA

Domains

Predicted by InterproScan.

Aminotransferase class I and II (Aminotran_1_2)

(46-378)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cqsA Vibrio cholerae strain A1552

57.623

98.473

0.567