Detailed information    

insolico Bioinformatically predicted

Overview

Name   fimT   Type   Machinery gene
Locus tag   NE424_RS16700 Genome accession   NZ_CP098795
Coordinates   3452229..3452744 (-) Length   171 a.a.
NCBI ID   WP_000477151.1    Uniprot ID   V5VA61
Organism   Acinetobacter baumannii strain VB280821     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3447229..3457744
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NE424_RS16675 (NE424_16675) - 3447776..3449419 (+) 1644 WP_000281766.1 nitrite/sulfite reductase -
  NE424_RS16680 (NE424_16680) - 3449412..3449897 (+) 486 WP_000935248.1 DUF934 domain-containing protein -
  NE424_RS16685 (NE424_16685) - 3449979..3450332 (+) 354 WP_000457779.1 SMR family transporter -
  NE424_RS16690 (NE424_16690) - 3450375..3450818 (-) 444 WP_001176580.1 VOC family protein -
  NE424_RS16695 (NE424_16695) - 3450945..3452120 (-) 1176 WP_000129968.1 thiolase family protein -
  NE424_RS16700 (NE424_16700) fimT 3452229..3452744 (-) 516 WP_000477151.1 GspH/FimT family pseudopilin Machinery gene
  NE424_RS16705 (NE424_16705) omp38 3453125..3454153 (+) 1029 WP_000777889.1 outer membrane protein Omp38 -
  NE424_RS16710 (NE424_16710) - 3454278..3454421 (-) 144 WP_162138624.1 hypothetical protein -
  NE424_RS16715 (NE424_16715) - 3454440..3455645 (-) 1206 WP_000512698.1 RtcB family protein -
  NE424_RS16720 (NE424_16720) - 3455922..3457382 (-) 1461 WP_000004971.1 amino acid permease -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 19606.86 Da        Isoelectric Point: 8.8196

>NTDB_id=601353 NE424_RS16700 WP_000477151.1 3452229..3452744(-) (fimT) [Acinetobacter baumannii strain VB280821]
MFKSPGFTIVELTITLVILVIMSVIAIPLYHQFMASVELKNTPRILTIHIQKAKYDAIIRHKNVVLCPSSDQLVCNTNWD
NRVISFVDNNRNLQHDLNEELLTSIDLNHHYGSMKLQRFGKKQNSIIFQGSSGLPIESNGSFIYCSYDQLKNFKLILSKM
GHVRLEELKNC

Nucleotide


Download         Length: 516 bp        

>NTDB_id=601353 NE424_RS16700 WP_000477151.1 3452229..3452744(-) (fimT) [Acinetobacter baumannii strain VB280821]
ATGTTTAAATCTCCTGGTTTTACTATAGTTGAGCTCACTATAACACTCGTAATTCTTGTGATTATGTCAGTTATAGCCAT
TCCTTTATACCATCAATTTATGGCATCTGTAGAACTAAAAAATACGCCGCGCATACTCACAATTCATATACAAAAAGCCA
AATATGACGCAATTATTAGGCATAAGAATGTTGTTCTTTGTCCAAGTTCTGATCAATTGGTCTGCAATACGAATTGGGAT
AACCGCGTAATCAGCTTTGTAGATAATAACCGTAATCTACAGCATGATTTAAATGAAGAATTATTGACCTCTATAGATCT
TAACCATCACTACGGTTCTATGAAATTACAACGTTTTGGAAAAAAACAAAATAGTATTATTTTTCAAGGTAGTTCTGGAC
TACCCATCGAGTCGAATGGCAGTTTTATCTATTGTTCTTATGACCAGCTTAAAAACTTTAAATTAATTCTTAGCAAAATG
GGCCATGTGCGCTTAGAAGAGCTTAAAAATTGTTAG

Domains

Predicted by InterProScan.

Type II transport protein GspH (GspH)

(50-149)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB V5VA61

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  fimT Acinetobacter baylyi ADP1

43.976

97.076

0.427