Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxP   Type   Regulator
Locus tag   K6752_RS16225 Genome accession   NZ_CP082316
Coordinates   175764..176861 (+) Length   365 a.a.
NCBI ID   WP_213972231.1    Uniprot ID   -
Organism   Vibrio alginolyticus strain ZLV3     
Function   autoinducer sensor (predicted from homology)   
Competence regulation

Genomic Context

Location: 170764..181861
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K6752_RS16200 (K6752_16130) - 172085..173422 (-) 1338 WP_169628905.1 MATE family efflux transporter -
  K6752_RS16205 (K6752_16135) - 173544..173858 (-) 315 WP_005373603.1 DUF496 family protein -
  K6752_RS16210 (K6752_16140) - 174100..174303 (+) 204 WP_031777159.1 hypothetical protein -
  K6752_RS16215 (K6752_16145) - 174469..175119 (+) 651 WP_005373594.1 YceH family protein -
  K6752_RS16220 (K6752_16150) - 175116..175433 (+) 318 WP_053304534.1 GIY-YIG nuclease family protein -
  K6752_RS16225 (K6752_16155) luxP 175764..176861 (+) 1098 WP_213972231.1 autoinducer 2-binding periplasmic protein LuxP Regulator
  K6752_RS16230 (K6752_16160) luxQ 176861..179437 (+) 2577 WP_005373590.1 quorum-sensing autoinducer 2 sensor kinase/phosphatase LuxQ -
  K6752_RS16235 (K6752_16165) slyA 179743..180198 (+) 456 WP_005373589.1 transcriptional regulator SlyA -
  K6752_RS16240 (K6752_16170) - 180234..181292 (+) 1059 WP_054574591.1 HlyD family secretion protein -

Sequence

Protein


Download         Length: 365 a.a.        Molecular weight: 41591.03 Da        Isoelectric Point: 5.9503

>NTDB_id=601353 K6752_RS16225 WP_213972231.1 175764..176861(+) (luxP) [Vibrio alginolyticus strain ZLV3]
MKKALVFSLISMAAFTPNVQATQVLNGYWAYQEFLDQFPQQKQLTSALAEVVRETPVAVAKDKKRPLKISVVYPGQQISD
YWIRNIDAFEKRLDKLDIDYQLNQVFTRPNADIKQQSLSLMEALKSNSDYLIFTLDTTRHRKFVEHVLDSKKTKLILQNI
TTPVRDWEHHQPFLYVGFDHAEGSRELAVEFGKRFPKHSHYSVLYFSEGYISDIRGNTFINQVNRDNQFELQSAYYTKAT
KQSGYEAAKASLEKYPDVDFIYACSTDVALGAVDALKELGRDDVMINGWGGGSAELEALSKGELDVTVMRMNDDTGIAMA
EAIKWDLEGKPVPTVYSGDFEVVTKSDSPERIEALRKRAFRYSDN

Nucleotide


Download         Length: 1098 bp        

>NTDB_id=601353 K6752_RS16225 WP_213972231.1 175764..176861(+) (luxP) [Vibrio alginolyticus strain ZLV3]
ATGAAAAAAGCGTTAGTATTCTCCCTGATTTCAATGGCCGCTTTTACGCCGAATGTGCAGGCCACCCAAGTTCTTAATGG
GTATTGGGCATATCAAGAATTTTTAGACCAGTTTCCACAACAGAAGCAGCTAACTAGTGCGTTGGCTGAAGTGGTAAGAG
AAACCCCTGTAGCCGTAGCAAAAGACAAAAAGCGTCCACTGAAAATTTCTGTTGTTTATCCAGGGCAGCAGATCTCTGAT
TATTGGATTCGAAACATCGATGCGTTTGAAAAACGCCTAGATAAGCTTGATATCGACTATCAACTAAATCAAGTGTTTAC
TCGTCCTAATGCAGATATAAAGCAGCAAAGTTTGTCTTTAATGGAGGCGCTGAAAAGCAACTCCGATTACTTGATCTTTA
CTCTAGATACCACAAGACATCGTAAGTTTGTTGAGCATGTCTTAGATTCAAAGAAAACCAAGTTAATTTTACAAAATATC
ACCACACCTGTTAGGGATTGGGAACATCATCAGCCGTTTCTTTATGTTGGTTTCGACCACGCAGAAGGAAGTCGTGAATT
GGCCGTTGAGTTTGGCAAGCGTTTCCCTAAACATAGCCACTATAGTGTTCTCTATTTCTCGGAGGGCTACATTAGTGACA
TCAGAGGCAACACTTTTATCAACCAAGTGAACCGCGATAATCAATTTGAACTACAATCTGCTTACTACACCAAAGCAACA
AAGCAATCTGGGTATGAAGCTGCAAAAGCCAGTTTGGAGAAGTATCCGGACGTTGACTTCATTTACGCGTGTTCTACCGA
TGTAGCATTAGGTGCTGTTGACGCTCTTAAAGAGTTAGGTCGTGATGATGTCATGATCAATGGTTGGGGCGGCGGTTCAG
CAGAGTTAGAGGCGCTTTCTAAAGGGGAGTTAGACGTTACCGTTATGCGTATGAACGATGATACAGGTATTGCAATGGCT
GAGGCCATTAAGTGGGATTTAGAAGGAAAGCCAGTTCCCACCGTTTACTCTGGTGATTTTGAAGTCGTTACCAAATCGGA
CTCTCCAGAAAGAATTGAAGCATTAAGAAAACGTGCATTTAGATACTCAGATAATTGA

Domains

Predicted by InterproScan.

Periplasmic binding protein domain (Peripla_BP_4)

(69-324)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxP Vibrio cholerae strain A1552

64.835

99.726

0.647