Detailed information    

insolico Bioinformatically predicted

Overview

Name   cytR   Type   Regulator
Locus tag   K6752_RS14015 Genome accession   NZ_CP082315
Coordinates   2998301..2999308 (+) Length   335 a.a.
NCBI ID   WP_005379543.1    Uniprot ID   -
Organism   Vibrio alginolyticus strain ZLV3     
Function   promote competence gene expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 2993301..3004308
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K6752_RS13995 (K6752_13925) rplC 2993843..2994472 (-) 630 WP_005379555.1 50S ribosomal protein L3 -
  K6752_RS14000 (K6752_13930) rpsJ 2994487..2994798 (-) 312 WP_004410492.1 30S ribosomal protein S10 -
  K6752_RS14005 (K6752_13935) rpmE 2995255..2995476 (-) 222 WP_005379546.1 50S ribosomal protein L31 -
  K6752_RS14010 (K6752_13940) priA 2995772..2997976 (+) 2205 WP_182015973.1 primosomal protein N' -
  K6752_RS14015 (K6752_13945) cytR 2998301..2999308 (+) 1008 WP_005379543.1 DNA-binding transcriptional regulator CytR Regulator
  K6752_RS14020 (K6752_13950) ftsN 2999534..3000082 (+) 549 WP_017820300.1 cell division protein FtsN -
  K6752_RS14025 (K6752_13955) hslV 3000198..3000749 (+) 552 WP_005379541.1 ATP-dependent protease subunit HslV -
  K6752_RS14030 (K6752_13960) hslU 3000773..3002104 (+) 1332 WP_025768349.1 HslU--HslV peptidase ATPase subunit -
  K6752_RS14035 (K6752_13965) - 3002896..3003812 (+) 917 Protein_2612 1,4-dihydroxy-2-naphthoate polyprenyltransferase -

Sequence

Protein


Download         Length: 335 a.a.        Molecular weight: 36892.42 Da        Isoelectric Point: 6.2447

>NTDB_id=601345 K6752_RS14015 WP_005379543.1 2998301..2999308(+) (cytR) [Vibrio alginolyticus strain ZLV3]
MATMKDVAQLAGVSTATVSRALMNPEKVSSSTRKRVEDAVLEAGYSPNSLARNLRRNESKTIVTIVPDICDPYFSEIIRG
IEDAAMEHGYLVLLGDSGQQKKRESSFVNLVFTKQADGMLLLGTDLPFDVSKPEQKNLPPMVMACEFAPELELPTVHIDN
LTSAFEAVNYLTQLGHKRIAQISGPDTAILCQFRQQGYQQALRRAGINKDPQYSVITEFSFDGGAKAVRKLLELPEPPTA
IFCHCDTMAIGAIQEAKKLGLRVPQDLSVVGFDDINFAQYCDPPLTTISQPRYEIGRQAMLMMLEMLKGHDVHSGSRLLE
TNLVIRGSAAPPQRP

Nucleotide


Download         Length: 1008 bp        

>NTDB_id=601345 K6752_RS14015 WP_005379543.1 2998301..2999308(+) (cytR) [Vibrio alginolyticus strain ZLV3]
ATGGCGACAATGAAGGATGTTGCCCAGCTTGCGGGAGTGTCTACGGCTACGGTATCTCGAGCCTTAATGAATCCAGAGAA
AGTCTCTTCTTCTACAAGAAAGAGAGTAGAAGATGCCGTACTTGAAGCGGGTTATTCTCCAAACTCATTAGCGCGTAACT
TACGTAGAAACGAATCAAAAACCATTGTTACTATCGTTCCCGACATCTGTGATCCTTATTTTTCTGAAATTATTCGCGGT
ATTGAAGATGCAGCCATGGAACATGGCTATCTAGTCCTGTTGGGTGATAGCGGACAACAGAAGAAACGCGAAAGCTCTTT
CGTTAACCTCGTATTTACTAAGCAGGCAGATGGAATGCTACTGCTTGGTACAGATCTACCATTCGATGTCAGTAAGCCAG
AGCAAAAGAACTTACCTCCGATGGTAATGGCGTGTGAATTTGCGCCAGAGCTCGAGCTTCCGACAGTACATATTGATAAC
CTGACCTCAGCATTTGAAGCGGTGAATTACCTGACCCAATTAGGTCATAAACGCATTGCTCAAATCTCTGGACCAGATAC
AGCAATATTGTGTCAGTTCCGCCAGCAAGGCTACCAACAAGCCCTGCGCCGTGCCGGCATCAATAAAGATCCACAATATA
GTGTCATTACTGAGTTCTCTTTTGATGGCGGAGCAAAAGCCGTTCGTAAACTGCTCGAATTGCCAGAACCACCAACGGCT
ATTTTCTGTCACTGTGACACAATGGCCATCGGCGCAATTCAAGAAGCGAAAAAGCTTGGCTTACGAGTACCGCAAGATCT
CTCTGTTGTGGGCTTTGATGACATTAACTTCGCTCAGTACTGCGATCCACCGTTGACCACCATCTCTCAACCTCGCTATG
AGATTGGTCGACAAGCGATGCTAATGATGCTCGAGATGTTAAAAGGCCACGACGTGCATTCAGGCTCGCGTCTGCTTGAA
ACTAATCTCGTCATTCGTGGAAGTGCAGCGCCACCACAGCGCCCTTAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, lacI family (LacI)

(3-48)

Periplasmic binding protein-like domain (Peripla_BP_3)

(168-328)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cytR Vibrio parahaemolyticus RIMD 2210633

98.204

99.701

0.979
  cytR Vibrio cholerae C6706

89.521

99.701

0.893