Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   K6752_RS09130 Genome accession   NZ_CP082315
Coordinates   1921619..1923040 (+) Length   473 a.a.
NCBI ID   WP_005377886.1    Uniprot ID   -
Organism   Vibrio alginolyticus strain ZLV3     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1916619..1928040
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K6752_RS09110 (K6752_09055) - 1917100..1917906 (-) 807 WP_053306937.1 adenosylcobinamide-GDP ribazoletransferase -
  K6752_RS09115 (K6752_09060) cobT 1917906..1918949 (-) 1044 WP_005377883.1 nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase -
  K6752_RS09120 (K6752_09065) - 1919198..1919887 (+) 690 WP_005377884.1 NAD(P)H-binding protein -
  K6752_RS09125 (K6752_09070) - 1920088..1921461 (+) 1374 WP_005377885.1 L-cystine transporter -
  K6752_RS09130 (K6752_09075) sbcB 1921619..1923040 (+) 1422 WP_005377886.1 exodeoxyribonuclease I Machinery gene
  K6752_RS09135 (K6752_09080) - 1923096..1923470 (+) 375 WP_005377887.1 CidA/LrgA family protein -
  K6752_RS09140 (K6752_09085) - 1923472..1924149 (+) 678 WP_005377888.1 LrgB family protein -
  K6752_RS09145 (K6752_09090) cdd 1924580..1925467 (+) 888 WP_005377892.1 cytidine deaminase -
  K6752_RS09150 (K6752_09095) purT 1925611..1926786 (+) 1176 WP_005377894.1 formate-dependent phosphoribosylglycinamide formyltransferase -
  K6752_RS09155 (K6752_09100) - 1926859..1927509 (-) 651 WP_031778984.1 thiopurine S-methyltransferase -

Sequence

Protein


Download         Length: 473 a.a.        Molecular weight: 54388.54 Da        Isoelectric Point: 4.8633

>NTDB_id=601335 K6752_RS09130 WP_005377886.1 1921619..1923040(+) (sbcB) [Vibrio alginolyticus strain ZLV3]
MHQDNQPTFFFFDYETWGTNPAKDRPSQFAGARTDENFNIIGEPLVMYCQPPADYLPSPEAALITGITPQKTVQEGLSEP
EFIAKIHAELARPNTTSLGYNSIRFDDEVTRYTCYRNFIDPYAWSWQNGNSRWDLLDVLRACHALRPEGVEWPENEDGFT
SFKLEHLSVANGIEHSNAHDAMADVVATIEMAKKVKAAQPKLFDYFFSMRQKRKLNDLVDIVNMTPLMHVSGMLGRECQY
TSWIVPVAWHPTNNNAVITIDLAKDPQPILELSAEELHERLYTKREDLGELLPVPVKLVHLNKCPILAPAKTLTAENAES
IGIDRQQCLANLALLRQHPEIREKLISLFSVERKFDKSDDVDTQLYDGFFSPADRAAMDIIRETDPNNLAALDIEFDDKR
IKPLLFRYRARNFPGTLDEQEQRRWALHCREVFESQIEEYMLNLENLVHEHESDEKKIAILKSVYRYVESLAS

Nucleotide


Download         Length: 1422 bp        

>NTDB_id=601335 K6752_RS09130 WP_005377886.1 1921619..1923040(+) (sbcB) [Vibrio alginolyticus strain ZLV3]
ATGCACCAAGATAATCAGCCCACTTTTTTCTTCTTTGATTATGAGACATGGGGAACCAACCCCGCGAAAGATCGCCCAAG
CCAGTTTGCTGGTGCTCGTACAGATGAAAACTTTAATATCATCGGCGAGCCTTTAGTCATGTACTGTCAACCACCGGCTG
ATTATCTTCCGTCTCCTGAAGCTGCGCTTATTACTGGTATTACTCCGCAAAAAACGGTTCAAGAAGGCCTTTCTGAGCCA
GAGTTTATCGCTAAGATTCACGCTGAACTCGCGAGACCAAATACCACCAGTTTAGGCTACAACAGCATTCGCTTTGATGA
CGAAGTGACCCGTTATACTTGTTATCGCAACTTCATCGATCCATACGCATGGAGTTGGCAAAACGGTAACTCGCGTTGGG
ATTTACTCGATGTACTACGCGCGTGCCATGCCCTTCGCCCAGAAGGCGTAGAATGGCCAGAAAACGAAGATGGCTTCACT
AGCTTTAAATTAGAACATTTGTCCGTGGCTAACGGCATAGAACATAGTAACGCGCACGATGCGATGGCAGATGTGGTTGC
GACTATCGAAATGGCAAAGAAAGTAAAAGCAGCGCAACCAAAATTGTTTGATTACTTTTTTTCTATGCGCCAAAAGCGCA
AGCTCAATGATTTAGTCGACATCGTCAACATGACACCGTTGATGCACGTTTCAGGCATGCTAGGGCGCGAATGTCAGTAC
ACTAGCTGGATTGTGCCTGTTGCTTGGCATCCAACCAATAATAACGCCGTTATCACCATCGATTTAGCGAAAGACCCTCA
ACCTATTCTTGAGCTATCCGCAGAAGAGCTGCACGAAAGACTCTACACGAAGCGCGAAGATCTTGGTGAATTGCTACCAG
TGCCAGTTAAACTAGTTCATTTGAACAAATGCCCTATTCTCGCCCCTGCAAAAACGTTAACGGCTGAAAATGCGGAGTCT
ATTGGCATTGATCGCCAGCAATGTCTCGCCAATCTCGCTTTGTTGCGCCAACATCCTGAAATTAGAGAAAAGCTGATTAG
CCTCTTTTCAGTCGAGCGCAAATTCGATAAAAGTGATGACGTCGATACACAACTTTACGACGGGTTCTTTTCTCCAGCCG
ATCGCGCAGCTATGGATATCATTCGCGAAACCGATCCGAATAATCTTGCTGCATTAGACATTGAATTTGATGACAAGCGT
ATTAAACCTCTATTGTTCCGCTATCGTGCGCGTAACTTCCCAGGCACATTAGACGAGCAAGAACAAAGACGCTGGGCACT
ACACTGTCGAGAAGTGTTTGAAAGCCAAATTGAAGAGTACATGCTGAATTTAGAAAACTTAGTTCACGAACATGAAAGTG
ACGAAAAGAAGATTGCGATATTAAAATCCGTGTACCGTTATGTAGAGAGCTTAGCTTCCTAA

Domains

Predicted by InterproScan.

Exonuclease C-terminal (Exonuc_X-T_C)

(210-469)

Exonuclease (RNase_T)

(11-190)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

79.281

100

0.793