Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxO   Type   Regulator
Locus tag   K6752_RS08210 Genome accession   NZ_CP082315
Coordinates   1703336..1704862 (+) Length   508 a.a.
NCBI ID   WP_031778967.1    Uniprot ID   -
Organism   Vibrio alginolyticus strain ZLV3     
Function   promote HapR production (predicted from homology)   
Competence regulation

Genomic Context

Location: 1698336..1709862
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K6752_RS08185 (K6752_08135) - 1698637..1698957 (+) 321 WP_005377630.1 STAS domain-containing protein -
  K6752_RS08190 (K6752_08140) - 1698984..1699850 (+) 867 WP_005377631.1 OmpA family protein -
  K6752_RS08195 (K6752_08145) - 1699847..1701949 (+) 2103 WP_238972084.1 SLBB domain-containing protein -
  K6752_RS08200 (K6752_08150) - 1701949..1702635 (+) 687 WP_005377635.1 AAA family ATPase -
  K6752_RS08205 (K6752_08155) - 1702647..1703027 (+) 381 WP_005377636.1 Hpt domain-containing protein -
  K6752_RS08210 (K6752_08160) luxO 1703336..1704862 (+) 1527 WP_031778967.1 sigma-54-dependent transcriptional regulator Regulator
  K6752_RS08215 (K6752_08165) - 1704837..1705907 (+) 1071 WP_005377638.1 glycosyltransferase family 4 protein -
  K6752_RS08220 (K6752_08170) - 1706052..1707236 (+) 1185 WP_005377639.1 glycosyltransferase -
  K6752_RS08225 (K6752_08175) - 1707248..1708420 (+) 1173 WP_005377641.1 glycosyltransferase -
  K6752_RS08230 (K6752_08180) - 1708413..1709843 (+) 1431 WP_005377643.1 lipopolysaccharide biosynthesis protein -

Sequence

Protein


Download         Length: 508 a.a.        Molecular weight: 56568.50 Da        Isoelectric Point: 5.9083

>NTDB_id=601334 K6752_RS08210 WP_031778967.1 1703336..1704862(+) (luxO) [Vibrio alginolyticus strain ZLV3]
MRPRVLLVEDSTSLAILYKQYVKDEPYDIFHVETGREAIQFIERSKPQLIILDLKLPDMSGEDVLDWINQNDIPTSVIIA
TAHGSVDLAVNLIQKGAEDFLEKPINADRLKTSVALHLKRAKLEDLVENIQSKFDRHNYHGFIGSSLPMQAVYKTIDAVA
PTSASVFIVGESGTGKEVCAEAVHRQSDRKDKPFIAINCGAIPRDLMESEIFGHVKGAFTGATTDRKGAATLAHGGTLFL
DELCEMELEMQKKLLRFLQTGTYTPLGGTREMKVDVRIICATNRDPLTEVEEGRFREDLYYRVHVIPIDMPPLRERGSDI
VTLAKHFLTTYAKQDKKKFSTIDSEAQHIIKHYEWPGNVRQLQNIIRNIVVLNNDEKVTVSHLPAQLTKKSKVTKTTTPA
HVAQESANIAPITPPPVYTEEPSPSAVEPSITAAELPGTPSSAATSPYFNADGTIRPMWQVEREAIQNAIAYCDGNVLNA
AVMLELSPSTVYRKKQAWEADEINLEQS

Nucleotide


Download         Length: 1527 bp        

>NTDB_id=601334 K6752_RS08210 WP_031778967.1 1703336..1704862(+) (luxO) [Vibrio alginolyticus strain ZLV3]
ATGAGACCAAGGGTGTTACTGGTAGAGGACTCTACTTCACTAGCCATACTTTATAAGCAGTATGTGAAAGACGAACCTTA
TGACATTTTTCATGTCGAGACAGGTCGCGAAGCGATTCAATTTATTGAAAGAAGCAAACCTCAGCTCATCATTCTCGATT
TGAAACTGCCCGACATGTCTGGCGAAGACGTGTTGGATTGGATCAACCAGAATGACATTCCTACGTCCGTTATTATTGCT
ACGGCACACGGCAGCGTCGACTTAGCCGTTAATCTAATTCAAAAAGGTGCGGAAGATTTCTTAGAAAAGCCCATAAACGC
TGATCGCCTAAAAACATCAGTCGCATTGCACCTCAAACGCGCCAAATTGGAAGATTTGGTGGAAAATATTCAGTCCAAGT
TTGATCGCCACAACTATCACGGATTCATCGGTTCAAGCCTCCCGATGCAGGCGGTATACAAGACCATTGATGCTGTTGCG
CCAACTTCTGCCAGTGTGTTTATTGTGGGAGAAAGCGGCACAGGTAAAGAAGTTTGTGCTGAAGCCGTCCACCGCCAGAG
CGACCGTAAAGACAAGCCTTTTATTGCAATTAACTGTGGGGCTATTCCACGAGATTTGATGGAAAGTGAGATTTTTGGTC
ACGTTAAAGGGGCCTTTACTGGAGCAACAACAGATCGAAAAGGTGCGGCGACGCTGGCACATGGTGGTACGCTTTTTCTT
GATGAGCTGTGTGAAATGGAACTTGAGATGCAAAAGAAGTTGCTCCGTTTTCTACAAACGGGCACTTACACCCCTCTTGG
TGGCACTCGAGAAATGAAAGTAGATGTGAGAATCATTTGTGCCACTAACCGAGATCCATTAACAGAAGTAGAAGAAGGTC
GTTTTCGTGAAGACTTATACTACCGTGTGCACGTTATACCTATCGATATGCCCCCATTACGTGAACGAGGAAGTGACATC
GTCACGCTTGCCAAGCACTTCTTGACCACTTACGCCAAACAGGACAAAAAGAAATTCTCAACAATCGACAGCGAAGCTCA
ACATATCATCAAGCATTACGAATGGCCGGGTAATGTAAGGCAACTACAAAACATCATACGTAACATTGTGGTGCTTAATA
ACGACGAAAAAGTCACGGTGAGCCACCTACCCGCTCAACTTACTAAAAAGTCTAAAGTGACGAAAACAACGACGCCTGCG
CATGTTGCTCAAGAGTCAGCAAACATTGCACCAATCACACCACCACCTGTTTATACTGAGGAACCTTCACCTTCTGCGGT
CGAACCGTCGATTACCGCAGCGGAGCTGCCTGGTACACCGTCCTCTGCTGCTACCTCACCGTACTTTAACGCTGATGGAA
CCATTCGTCCTATGTGGCAAGTAGAGCGTGAAGCAATTCAAAACGCAATCGCGTACTGTGATGGCAACGTCCTCAACGCC
GCTGTCATGCTGGAGTTAAGCCCATCTACGGTTTACCGAAAAAAACAAGCGTGGGAAGCGGATGAAATTAATCTCGAACA
ATCTTGA

Domains

Predicted by InterproScan.

Sigma-54 interaction domain (Sigma54_activat)

(143-308)

Response regulator receiver domain (Response_reg)

(5-114)

Bacterial regulatory protein, Fis family (HTH_8)

(458-494)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxO Vibrio cholerae strain A1552

49.899

97.047

0.484