Detailed information NTG0601323

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: K6752_RS02770
• Genome accession: NZ_CP082315
• Coordinates: 576357..577346 (+)
• Length: 329 a.a.
• NCBI ID: WP_213972539.1
• Uniprot ID: -
• Organism: Vibrio alginolyticus strain ZLV3
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 571357..582346

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
K6752_RS02735 (K6752_02735)	ftsB	571365..571646 (+)	282	WP_005380907.1	cell division protein FtsB	-
K6752_RS02740 (K6752_02740)	ispD	571648..572355 (+)	708	WP_005380898.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
K6752_RS02745 (K6752_02745)	ispF	572372..572848 (+)	477	WP_005380896.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
K6752_RS02750 (K6752_02750)	truD	572894..573937 (+)	1044	WP_005380895.1	tRNA pseudouridine(13) synthase TruD	-
K6752_RS02755 (K6752_02755)	surE	573937..574713 (+)	777	WP_005380894.1	5'/3'-nucleotidase SurE	-
K6752_RS02760 (K6752_02760)	-	574713..575339 (+)	627	WP_005380892.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
K6752_RS02765 (K6752_02765)	-	575353..576276 (+)	924	WP_005380889.1	peptidoglycan DD-metalloendopeptidase family protein	-
K6752_RS02770 (K6752_02770)	rpoS	576357..577346 (+)	990	WP_213972539.1	RNA polymerase sigma factor RpoS	Regulator
K6752_RS02775 (K6752_02775)	mutS	577429..579990 (-)	2562	WP_005380877.1	DNA mismatch repair protein MutS	-
K6752_RS02780 (K6752_02780)	pncC	580075..580557 (+)	483	WP_005380875.1	nicotinamide-nucleotide amidase	-
K6752_RS02785 (K6752_02785)	recA	580758..581801 (+)	1044	WP_005380874.1	recombinase RecA	Machinery gene

Sequence

Protein

• Length: 329 a.a.
• Molecular weight: 37541.43 Da
• Isoelectric Point: 4.6899

>NTDB_id=601323 K6752_RS02770 WP_213972539.1 576357..577346(+) (rpoS) [Vibrio alginolyticus strain ZLV3]
MSISNTVTKVEEFAFDNASVKTIDNELERSSSTESKATAREEFDASSKSLDATQLYLGEIGFSPLLTAEEEEVLYARRAL
RGDEAARKRMIESNLRLVVKISRRYSNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERALMNQTRT
IRLPIHVVKELNIYLRTARELSQKLDHEPTAEEIAAQLDIPVEDVSKMLRLNERISSVDTPIGGDGEKALLDIIPDANNS
DPEVSTQDDDIKSSLIHWLEELNPKQKEVLARRFGLLGYEPSTLEEVGREIGLTRERVRQIQVEGLRRLREVLIKQGLNM
ENLFNVEDD

Nucleotide

• Length: 990 bp

>NTDB_id=601323 K6752_RS02770 WP_213972539.1 576357..577346(+) (rpoS) [Vibrio alginolyticus strain ZLV3]
ATGAGTATCAGCAACACAGTAACCAAAGTTGAAGAGTTTGCATTTGATAATGCGTCAGTGAAGACCATTGATAACGAACT
CGAAAGATCATCATCCACAGAAAGCAAAGCGACTGCGCGTGAAGAATTTGACGCGAGCAGTAAAAGCTTAGATGCAACTC
AGTTGTATTTGGGCGAAATTGGCTTCTCACCTTTACTTACTGCCGAAGAAGAAGAAGTGCTTTACGCAAGACGCGCCCTA
CGTGGCGACGAAGCGGCACGCAAACGTATGATCGAAAGTAACCTACGTTTGGTTGTTAAGATTTCTCGTCGATACAGTAA
CCGTGGTCTAGCACTACTCGATCTGATTGAAGAAGGTAACCTCGGCTTGATCCGAGCGGTCGAAAAATTCGACCCAGAAC
GTGGTTTCCGTTTCTCTACTTACGCAACATGGTGGATCCGACAAACGATAGAGCGAGCGTTGATGAACCAAACTCGCACG
ATCCGTCTACCTATCCACGTAGTGAAAGAGCTGAACATTTATCTGCGTACTGCGCGTGAACTTTCTCAAAAGCTCGATCA
CGAACCGACCGCAGAAGAAATTGCTGCTCAATTAGATATTCCAGTCGAAGACGTAAGCAAAATGTTACGCCTTAATGAGC
GTATTAGCTCTGTCGACACGCCAATCGGTGGTGACGGTGAGAAAGCGCTGCTGGATATTATTCCTGATGCAAACAACTCT
GATCCAGAAGTTTCGACTCAAGATGACGACATCAAATCATCGTTGATTCATTGGTTAGAAGAGTTGAATCCGAAACAGAA
AGAAGTGCTTGCACGTCGCTTCGGCCTACTAGGCTACGAGCCTTCGACGCTGGAAGAAGTTGGTCGAGAGATTGGTCTGA
CACGTGAGCGAGTACGTCAAATACAAGTGGAAGGTTTACGTCGTCTTCGTGAAGTCCTAATCAAACAAGGTTTGAATATG
GAAAACTTATTTAACGTAGAAGACGATTAA

Domains

Predicted by InterproScan.

• Sigma-70 region 3 (Sigma70_r3) (170-243)

• Sigma-70 region 2 (Sigma70_r2) (90-159)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (51-85)

• Sigma-70, region 4 (Sigma70_r4) (258-311)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	83.582	100	0.851