Detailed information    

insolico Bioinformatically predicted

Overview

Name   recP/tkt   Type   Machinery gene
Locus tag   NE424_RS04620 Genome accession   NZ_CP098795
Coordinates   955591..957579 (-) Length   662 a.a.
NCBI ID   WP_000211068.1    Uniprot ID   V5XVR9
Organism   Acinetobacter baumannii strain VB280821     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 950591..962579
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NE424_RS04590 (NE424_04590) trmA 951154..952239 (+) 1086 WP_000204669.1 tRNA (uridine(54)-C5)-methyltransferase TrmA -
  NE424_RS04595 (NE424_04595) - 952489..952719 (+) 231 WP_000011679.1 hypothetical protein -
  NE424_RS04600 (NE424_04600) - 952755..953501 (-) 747 WP_000699306.1 phosphodiester glycosidase family protein -
  NE424_RS04605 (NE424_04605) - 953688..954278 (+) 591 WP_001187976.1 lecithin retinol acyltransferase family protein -
  NE424_RS04610 (NE424_04610) - 954324..954914 (-) 591 WP_000550331.1 YceI family protein -
  NE424_RS04615 (NE424_04615) - 955129..955536 (+) 408 WP_000248284.1 OsmC family protein -
  NE424_RS04620 (NE424_04620) recP/tkt 955591..957579 (-) 1989 WP_000211068.1 transketolase Machinery gene
  NE424_RS04625 (NE424_04625) metK 958103..959269 (+) 1167 WP_001209544.1 methionine adenosyltransferase -
  NE424_RS04630 (NE424_04630) - 959393..959641 (-) 249 WP_000966850.1 hypothetical protein -
  NE424_RS04635 (NE424_04635) - 959900..960085 (+) 186 WP_000192623.1 hypothetical protein -
  NE424_RS04640 (NE424_04640) - 960150..960710 (-) 561 WP_001050730.1 FxsA family protein -
  NE424_RS04645 (NE424_04645) - 961109..961933 (+) 825 WP_001021788.1 OXA-51 family carbapenem-hydrolyzing class D beta-lactamase OXA-64 -
  NE424_RS04650 (NE424_04650) - 962002..962547 (-) 546 WP_001109743.1 GNAT family N-acetyltransferase -

Sequence

Protein


Download         Length: 662 a.a.        Molecular weight: 72258.67 Da        Isoelectric Point: 4.9694

>NTDB_id=601301 NE424_RS04620 WP_000211068.1 955591..957579(-) (recP/tkt) [Acinetobacter baumannii strain VB280821]
MTTPLNERRIANAIRVLAMDAVQQANSGHPGAPMGMADIADVVWREFLNHNPNNPQWANRDRFVLSNGHGSMLQYALLHL
TGYDLSIEDLKQFRQLHSKTPGHPEYGYAPGIETTTGPLGQGIANAVGFALAEKTLAAQFNKDDLKVVDHFTYCFLGDGC
LMEGISHEVCSLAGTLQLGKLIAYYDDNGISIDGEVEGWFSDDTEERFKSYGWQVLRVDGHDADAIRQATVEAKAETQKP
TIIICKTIIGLGSPNKQGKEDCHGAPLGKDEITLTREALGWTEEAFVIPADVYAAWDAKAKGNEAEAAWNEVFAQYQAKY
PTEAAELLRRISGDLPAEFSAQADAFIRETNAKAETVATRKASQNTLQAFGPLLPELLGGSADLAGSNLTLWKGCQGVQE
NPAGNYVYYGVREFGMTAIANGVALHGGFIPYVATFLMFMEYARNAVRMSALMKQRVIHVYTHDSIGLGEDGPTHQPIEQ
IASLRGTPNLNTWRPADTVETAIAWKSALERKDGPTALIFSRQNLPFQTRTEEQIQNAAKGGYVLAQEKGELKAIIIATG
SEVSLAMEAYAQLEGVRVVSMPCAEEFMKQDAAYREAVLPAHIRARVAVEAAHVDYWWKFVGLDGKVIGMTTYGESAPAK
DLFQFFGITTEAVVAAVKELTA

Nucleotide


Download         Length: 1989 bp        

>NTDB_id=601301 NE424_RS04620 WP_000211068.1 955591..957579(-) (recP/tkt) [Acinetobacter baumannii strain VB280821]
ATGACGACCCCTTTAAACGAACGTCGTATTGCAAACGCAATTCGTGTATTGGCAATGGATGCTGTGCAACAGGCAAACTC
AGGGCATCCGGGTGCTCCAATGGGGATGGCAGATATTGCTGATGTCGTCTGGCGCGAGTTTTTAAATCACAACCCAAATA
ATCCACAATGGGCAAACCGTGACCGTTTTGTTTTATCAAATGGCCATGGTTCAATGTTGCAATATGCTTTGCTTCATTTA
ACAGGTTATGATCTTTCAATTGAAGATTTAAAACAATTCCGTCAATTGCACTCAAAAACTCCTGGTCACCCTGAATATGG
TTACGCTCCAGGGATTGAAACAACGACAGGTCCTTTGGGTCAAGGTATTGCGAACGCTGTTGGTTTTGCATTAGCAGAAA
AAACTTTAGCTGCTCAGTTTAATAAAGATGACTTAAAAGTAGTTGATCACTTTACCTATTGTTTCTTAGGTGATGGCTGT
TTAATGGAAGGTATTTCTCATGAAGTATGTTCTTTAGCAGGTACTTTACAGCTTGGTAAATTGATTGCTTATTATGATGA
CAACGGCATTTCGATTGATGGTGAAGTAGAAGGCTGGTTCAGTGATGACACTGAAGAGCGTTTCAAGTCTTATGGTTGGC
AAGTTCTTCGTGTAGATGGCCACGATGCTGATGCGATTCGTCAAGCAACAGTTGAAGCTAAAGCAGAAACTCAAAAACCA
ACGATTATTATTTGTAAAACAATTATTGGCTTAGGTTCTCCAAACAAGCAAGGTAAAGAAGACTGTCACGGTGCACCGCT
GGGTAAAGATGAAATTACCTTAACTCGTGAAGCTTTAGGTTGGACTGAAGAAGCATTTGTTATTCCTGCTGATGTATATG
CTGCATGGGATGCTAAAGCAAAAGGTAATGAAGCTGAAGCAGCTTGGAATGAAGTATTTGCTCAATACCAAGCAAAATAT
CCAACGGAAGCAGCTGAGTTACTTCGTCGTATTAGCGGTGACTTACCAGCAGAATTTTCAGCTCAAGCAGATGCATTTAT
TCGTGAAACAAATGCTAAAGCTGAAACTGTAGCAACTCGTAAAGCGAGCCAAAACACATTACAAGCATTTGGTCCTTTAT
TACCTGAATTATTAGGTGGTTCTGCGGACTTGGCAGGTTCTAACTTAACACTTTGGAAAGGTTGCCAAGGCGTTCAAGAA
AACCCGGCTGGTAACTACGTATATTATGGTGTACGTGAGTTCGGTATGACTGCAATCGCTAACGGTGTTGCATTGCATGG
CGGCTTCATTCCTTACGTTGCAACGTTCTTAATGTTTATGGAATATGCACGTAATGCGGTACGTATGTCTGCATTAATGA
AACAGCGCGTGATTCATGTGTATACACATGACTCAATCGGTTTAGGTGAAGATGGTCCAACACACCAACCAATTGAACAA
ATTGCTTCTTTACGTGGCACACCAAATTTAAATACTTGGCGTCCTGCTGATACTGTAGAAACAGCAATTGCGTGGAAATC
TGCTTTAGAGCGTAAAGATGGCCCTACAGCACTTATTTTCTCTCGTCAAAACTTACCATTCCAAACGCGTACTGAAGAGC
AAATCCAAAATGCGGCAAAAGGTGGTTATGTTCTTGCTCAAGAGAAAGGTGAGTTGAAAGCAATTATTATTGCTACTGGT
TCAGAAGTTTCTTTAGCAATGGAAGCTTATGCTCAACTTGAAGGTGTTCGCGTTGTTTCTATGCCATGTGCAGAAGAGTT
CATGAAACAAGATGCTGCATATCGTGAAGCAGTATTACCAGCTCATATTCGTGCACGTGTTGCTGTAGAAGCTGCTCACG
TTGACTACTGGTGGAAGTTTGTTGGTCTGGATGGCAAAGTAATCGGTATGACAACTTATGGTGAGTCAGCACCAGCAAAA
GACTTGTTCCAATTCTTCGGTATTACAACTGAGGCTGTAGTTGCTGCGGTAAAAGAGTTAACTGCTTAA

Domains

Predicted by InterProScan.

Transketolase, C-terminal domain (Transketolase_C)

(551-653)

Transketolase, pyrimidine binding domain (Transket_pyr)

(356-526)

Transketolase, thiamine diphosphate binding domain (Transketolase_N)

(7-336)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB V5XVR9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recP/tkt Streptococcus pneumoniae TIGR4

47.496

99.547

0.473