Detailed information    

insolico Bioinformatically predicted

Overview

Name   cytR   Type   Regulator
Locus tag   K6750_RS14430 Genome accession   NZ_CP082313
Coordinates   3052538..3053545 (+) Length   335 a.a.
NCBI ID   WP_005379543.1    Uniprot ID   -
Organism   Vibrio alginolyticus strain ZZV2     
Function   promote competence gene expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 3047538..3058545
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K6750_RS14410 (K6750_14345) rplC 3048079..3048708 (-) 630 WP_005379555.1 50S ribosomal protein L3 -
  K6750_RS14415 (K6750_14350) rpsJ 3048723..3049034 (-) 312 WP_004410492.1 30S ribosomal protein S10 -
  K6750_RS14420 (K6750_14355) rpmE 3049491..3049712 (-) 222 WP_005379546.1 50S ribosomal protein L31 -
  K6750_RS14425 (K6750_14360) priA 3050009..3052213 (+) 2205 WP_053349704.1 primosomal protein N' -
  K6750_RS14430 (K6750_14365) cytR 3052538..3053545 (+) 1008 WP_005379543.1 DNA-binding transcriptional regulator CytR Regulator
  K6750_RS14435 (K6750_14370) ftsN 3053771..3054319 (+) 549 WP_017820300.1 cell division protein FtsN -
  K6750_RS14440 (K6750_14375) hslV 3054435..3054986 (+) 552 WP_158159544.1 ATP-dependent protease subunit HslV -
  K6750_RS14445 (K6750_14380) hslU 3055010..3056341 (+) 1332 WP_025768349.1 HslU--HslV peptidase ATPase subunit -
  K6750_RS14450 (K6750_14385) - 3057456..3058373 (+) 918 WP_005397953.1 1,4-dihydroxy-2-naphthoate polyprenyltransferase -

Sequence

Protein


Download         Length: 335 a.a.        Molecular weight: 36892.42 Da        Isoelectric Point: 6.2447

>NTDB_id=601298 K6750_RS14430 WP_005379543.1 3052538..3053545(+) (cytR) [Vibrio alginolyticus strain ZZV2]
MATMKDVAQLAGVSTATVSRALMNPEKVSSSTRKRVEDAVLEAGYSPNSLARNLRRNESKTIVTIVPDICDPYFSEIIRG
IEDAAMEHGYLVLLGDSGQQKKRESSFVNLVFTKQADGMLLLGTDLPFDVSKPEQKNLPPMVMACEFAPELELPTVHIDN
LTSAFEAVNYLTQLGHKRIAQISGPDTAILCQFRQQGYQQALRRAGINKDPQYSVITEFSFDGGAKAVRKLLELPEPPTA
IFCHCDTMAIGAIQEAKKLGLRVPQDLSVVGFDDINFAQYCDPPLTTISQPRYEIGRQAMLMMLEMLKGHDVHSGSRLLE
TNLVIRGSAAPPQRP

Nucleotide


Download         Length: 1008 bp        

>NTDB_id=601298 K6750_RS14430 WP_005379543.1 3052538..3053545(+) (cytR) [Vibrio alginolyticus strain ZZV2]
ATGGCGACAATGAAGGATGTTGCCCAGCTTGCGGGAGTGTCTACGGCTACGGTATCTCGAGCCTTAATGAATCCAGAGAA
AGTCTCTTCTTCTACAAGAAAGAGAGTAGAAGATGCCGTACTTGAAGCGGGTTATTCTCCAAACTCATTAGCGCGTAACT
TACGTAGAAACGAATCAAAAACCATTGTTACTATCGTTCCCGACATCTGTGATCCTTATTTTTCTGAAATTATTCGCGGT
ATTGAAGATGCAGCCATGGAACATGGCTATCTAGTCCTGTTGGGTGATAGCGGACAACAGAAGAAACGCGAAAGCTCTTT
CGTTAACCTCGTATTTACTAAGCAGGCAGATGGAATGCTACTGCTTGGTACAGATCTACCATTCGATGTCAGTAAGCCAG
AGCAAAAGAACTTACCTCCGATGGTAATGGCGTGTGAATTTGCGCCAGAGCTCGAGCTTCCGACAGTACATATTGATAAC
CTGACCTCAGCATTTGAAGCGGTGAATTACCTGACTCAATTAGGTCATAAACGCATTGCTCAAATCTCTGGACCAGACAC
AGCAATATTGTGTCAGTTCCGCCAGCAAGGCTACCAACAAGCCCTGCGCCGTGCCGGCATCAATAAAGATCCACAATATA
GTGTCATTACTGAGTTCTCTTTTGATGGCGGAGCAAAAGCCGTTCGTAAACTGCTCGAATTGCCAGAACCACCAACGGCT
ATTTTCTGTCACTGTGACACAATGGCCATCGGCGCAATTCAAGAAGCGAAAAAGCTTGGCTTACGAGTACCGCAAGATCT
CTCTGTTGTGGGCTTTGATGACATTAACTTCGCTCAGTACTGCGATCCACCGTTGACCACCATCTCTCAACCTCGCTATG
AGATTGGTCGACAAGCGATGCTAATGATGCTCGAGATGTTAAAAGGCCACGACGTGCATTCAGGCTCGCGTCTGCTTGAA
ACTAATCTCGTCATTCGTGGAAGTGCAGCGCCACCACAGCGTCCTTAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, lacI family (LacI)

(3-48)

Periplasmic binding protein-like domain (Peripla_BP_3)

(168-328)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cytR Vibrio parahaemolyticus RIMD 2210633

98.204

99.701

0.979
  cytR Vibrio cholerae C6706

89.521

99.701

0.893