Detailed information NTG0601288

Bioinformatically predicted

Overview

• Name: sbcB
• Type: Machinery gene
• Locus tag: K6750_RS09270
• Genome accession: NZ_CP082313
• Coordinates: 1933329..1934750 (+)
• Length: 473 a.a.
• NCBI ID: WP_085569561.1
• Uniprot ID: -
• Organism: Vibrio alginolyticus strain ZZV2
• Function: promote homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 1928329..1939750

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
K6750_RS09250 (K6750_09200)	-	1928810..1929586 (-)	777	WP_215810306.1	adenosylcobinamide-GDP ribazoletransferase	-
K6750_RS09255 (K6750_09205)	cobT	1929616..1930659 (-)	1044	WP_149191865.1	nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase	-
K6750_RS09260 (K6750_09210)	-	1930908..1931597 (+)	690	WP_053350419.1	NAD(P)H-binding protein	-
K6750_RS09265 (K6750_09215)	-	1931798..1933171 (+)	1374	WP_005377885.1	L-cystine transporter	-
K6750_RS09270 (K6750_09220)	sbcB	1933329..1934750 (+)	1422	WP_085569561.1	exodeoxyribonuclease I	Machinery gene
K6750_RS09275 (K6750_09225)	-	1934806..1935180 (+)	375	WP_005377887.1	CidA/LrgA family protein	-
K6750_RS09280 (K6750_09230)	-	1935182..1935859 (+)	678	WP_005377888.1	LrgB family protein	-
K6750_RS09285 (K6750_09235)	cdd	1936290..1937177 (+)	888	WP_005377892.1	cytidine deaminase	-
K6750_RS09290 (K6750_09240)	-	1937218..1938421 (-)	1204	Protein_1708	IS3 family transposase	-

Sequence

Protein

• Length: 473 a.a.
• Molecular weight: 54388.58 Da
• Isoelectric Point: 4.8633

>NTDB_id=601288 K6750_RS09270 WP_085569561.1 1933329..1934750(+) (sbcB) [Vibrio alginolyticus strain ZZV2]
MHQDNQPTFFFFDYETWGTNPAKDRPSQFAGVRTDENFNIIGEPLVMYCQPPADYLPSPEAALITGITPQKTVQEGLSEP
EFIAKIHAELAKPNTTSLGYNSIRFDDEVTRYTCYRNFIDPYAWSWQNGNSRWDLLDVLRACHALRPEGVEWPENEDGFT
SFKLEHLSVANGIEHSNAHDAMADVVATIEMAKKVKAAQPKLFDYFFSMRQKRKLNDLVDIVNMTPLMHVSGMLGRECQY
TSWIVPVAWHPTNNNAVITIDLAKDPQPILELSAEELHERLYTKREDLGELLPVPVKLVHLNKCPILAPAKTLTAENAES
IGIDRQQCLANLALLRQHPEIREKLISLFSVERKFDKSDDVDTQLYDGFFSPADRAAMDIIRETDPNNLAALDIEFDDKR
IKPLLFRYRARNFPGTLDEQEQRRWALHCREVFESQIEEYMLNLENLVHEHESDEKKIAILKSVYRYVESLAS

Nucleotide

• Length: 1422 bp

>NTDB_id=601288 K6750_RS09270 WP_085569561.1 1933329..1934750(+) (sbcB) [Vibrio alginolyticus strain ZZV2]
ATGCACCAAGATAATCAGCCCACTTTTTTCTTCTTTGATTATGAGACATGGGGAACCAACCCCGCGAAAGATCGCCCAAG
CCAGTTTGCTGGTGTTCGTACAGATGAAAACTTTAATATCATCGGCGAGCCTTTAGTCATGTACTGCCAGCCACCTGCTG
ATTATCTTCCGTCTCCTGAAGCTGCACTTATTACTGGTATTACTCCGCAAAAAACGGTTCAAGAAGGCCTTTCTGAGCCA
GAGTTTATCGCTAAGATTCACGCTGAACTCGCGAAACCAAATACTACCAGTTTAGGCTACAACAGCATTCGCTTTGATGA
CGAAGTGACCCGTTATACTTGTTATCGCAACTTTATCGATCCATACGCATGGAGTTGGCAAAACGGTAACTCACGTTGGG
ATTTACTCGATGTACTACGCGCGTGCCATGCCCTTCGCCCAGAAGGCGTAGAATGGCCAGAAAACGAAGATGGCTTCACT
AGCTTTAAATTAGAACACTTGTCTGTGGCTAACGGCATAGAGCATAGTAACGCGCACGATGCCATGGCAGATGTGGTTGC
GACTATCGAAATGGCAAAGAAAGTAAAAGCAGCGCAACCAAAATTGTTTGATTACTTTTTTTCTATGCGCCAAAAGCGCA
AGCTCAATGATTTAGTCGACATCGTCAACATGACACCGTTGATGCACGTTTCAGGCATGCTAGGGCGCGAATGCCAGTAC
ACTAGCTGGATTGTGCCTGTTGCTTGGCATCCAACCAATAATAACGCCGTTATCACCATCGATTTAGCGAAAGACCCTCA
ACCTATTCTTGAGCTATCCGCAGAAGAGCTGCACGAAAGACTCTACACTAAGCGCGAAGATCTTGGTGAATTGCTACCAG
TGCCAGTTAAACTAGTTCATTTGAACAAATGCCCTATTCTCGCCCCTGCAAAAACGTTAACGGCTGAAAATGCGGAGTCT
ATTGGCATTGATCGCCAGCAATGTCTCGCCAATCTCGCTTTGTTGCGCCAACATCCTGAAATTAGAGAAAAGCTGATTAG
CCTCTTTTCAGTCGAGCGCAAATTCGATAAAAGTGATGACGTCGATACACAACTTTACGACGGGTTCTTTTCTCCAGCCG
ATCGCGCAGCTATGGATATCATTCGCGAAACCGATCCGAATAATCTTGCTGCATTAGACATTGAATTTGATGACAAGCGT
ATTAAACCTCTATTGTTCCGCTATCGTGCGCGTAACTTCCCAGGCACATTAGACGAGCAAGAACAAAGACGCTGGGCACT
ACACTGTCGAGAAGTGTTTGAAAGCCAAATTGAAGAGTACATGCTGAATTTAGAAAACTTAGTTCACGAACATGAAAGTG
ACGAAAAGAAGATTGCGATATTAAAATCCGTGTACCGTTATGTAGAGAGCTTAGCTTCCTAA

Domains

Predicted by InterproScan.

• Exonuclease C-terminal (Exonuc_X-T_C) (210-469)

• Exonuclease (RNase_T) (11-190)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
sbcB	Vibrio cholerae O1 biovar El Tor strain E7946	79.493	100	0.795