Detailed information NTG0601276

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: K6750_RS02650
• Genome accession: NZ_CP082313
• Coordinates: 551102..552088 (+)
• Length: 328 a.a.
• NCBI ID: WP_238966831.1
• Uniprot ID: -
• Organism: Vibrio alginolyticus strain ZZV2
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 546102..557088

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
K6750_RS02615 (K6750_02615)	ftsB	546112..546393 (+)	282	WP_005380907.1	cell division protein FtsB	-
K6750_RS02620 (K6750_02620)	ispD	546395..547102 (+)	708	WP_017633548.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
K6750_RS02625 (K6750_02625)	ispF	547117..547593 (+)	477	WP_005380896.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
K6750_RS02630 (K6750_02630)	truD	547639..548682 (+)	1044	WP_017633547.1	tRNA pseudouridine(13) synthase TruD	-
K6750_RS02635 (K6750_02635)	surE	548682..549458 (+)	777	WP_005380894.1	5'/3'-nucleotidase SurE	-
K6750_RS02640 (K6750_02640)	-	549458..550084 (+)	627	WP_005380892.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
K6750_RS02645 (K6750_02645)	-	550098..551021 (+)	924	WP_017633546.1	peptidoglycan DD-metalloendopeptidase family protein	-
K6750_RS02650 (K6750_02650)	rpoS	551102..552088 (+)	987	WP_238966831.1	RNA polymerase sigma factor RpoS	Regulator
K6750_RS02655 (K6750_02655)	mutS	552171..554732 (-)	2562	WP_213891984.1	DNA mismatch repair protein MutS	-
K6750_RS02660 (K6750_02660)	pncC	554817..555299 (+)	483	WP_005383794.1	nicotinamide-nucleotide amidase	-
K6750_RS02665 (K6750_02665)	recA	555500..556543 (+)	1044	WP_005380874.1	recombinase RecA	Machinery gene

Sequence

Protein

• Length: 328 a.a.
• Molecular weight: 37343.20 Da
• Isoelectric Point: 4.6799

>NTDB_id=601276 K6750_RS02650 WP_238966831.1 551102..552088(+) (rpoS) [Vibrio alginolyticus strain ZZV2]
MSISNTVTKVEEFAFDNASVKTIDNELERSSSTESKATAREEFDASSKSLDATQLYLGEIGFSPLLTAEEEVLYARRALR
GDEAARKRMIESNLSLVVKISRRYSNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERALMNQTRTI
RLPIHVVKELNIYLRTARELSQKLDHEPTAEEIAAQLDIPVEDVSKMLRLNERISSVDTPIGGDGEKALLDIIPDANNSD
PEVSTQDDDIKSSLIHWLEELNPKQKEVLARRFGLLGYEPSTLEEVGREIGLTRERVRQIQVEGLRRLREVLIKQGLNME
NLFNVEDD

Nucleotide

• Length: 987 bp

>NTDB_id=601276 K6750_RS02650 WP_238966831.1 551102..552088(+) (rpoS) [Vibrio alginolyticus strain ZZV2]
ATGAGTATCAGCAACACAGTAACCAAAGTTGAAGAGTTTGCATTTGACAATGCGTCAGTGAAGACCATTGATAACGAACT
CGAAAGATCATCATCCACAGAAAGCAAAGCGACTGCGCGTGAAGAATTTGACGCGAGCAGTAAAAGCTTAGATGCAACTC
AGTTGTATTTGGGCGAAATTGGCTTCTCACCTTTACTTACTGCCGAAGAAGAAGTGCTTTACGCAAGACGCGCCCTACGT
GGCGACGAAGCGGCACGCAAACGTATGATCGAAAGTAACCTAAGTTTGGTTGTTAAGATTTCTCGTCGATACAGTAACCG
TGGTCTAGCACTACTCGATCTGATTGAAGAAGGTAACCTCGGCTTGATCCGAGCGGTCGAAAAATTCGACCCAGAACGTG
GTTTCCGTTTCTCTACTTACGCAACATGGTGGATCCGACAAACGATAGAGCGAGCGTTGATGAACCAAACTCGCACGATC
CGTCTACCTATCCACGTAGTGAAAGAGCTGAACATTTATCTGCGTACTGCGCGTGAACTTTCTCAAAAGCTCGATCACGA
ACCGACCGCAGAAGAAATTGCTGCTCAATTAGATATTCCAGTCGAAGACGTAAGCAAAATGTTACGCCTTAATGAGCGTA
TTAGCTCTGTCGACACGCCAATCGGTGGTGACGGTGAGAAAGCGCTGCTGGATATTATTCCTGATGCAAACAACTCTGAT
CCAGAAGTTTCGACTCAAGATGACGACATCAAATCATCGTTGATTCATTGGTTAGAAGAGTTGAATCCGAAACAGAAAGA
AGTGCTTGCACGTCGCTTCGGCCTACTAGGCTACGAGCCTTCGACGCTGGAAGAAGTTGGTCGAGAGATTGGTCTGACAC
GTGAGCGAGTACGTCAAATACAAGTGGAAGGTTTACGTCGTCTTCGTGAAGTCCTAATCAAACAAGGTTTGAATATGGAA
AACTTGTTTAACGTAGAAGACGATTAA

Domains

Predicted by InterproScan.

• Sigma-70 region 2 (Sigma70_r2) (89-158)

• Sigma-70, region 4 (Sigma70_r4) (257-310)

• Sigma-70 region 3 (Sigma70_r3) (169-242)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (51-84)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	83.533	100	0.851