Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxO   Type   Regulator
Locus tag   K6749_RS07250 Genome accession   NZ_CP082310
Coordinates   1595000..1596526 (-) Length   508 a.a.
NCBI ID   WP_213967700.1    Uniprot ID   -
Organism   Vibrio alginolyticus strain HYV1     
Function   promote HapR production (predicted from homology)   
Competence regulation

Genomic Context

Location: 1590000..1601526
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K6749_RS07230 (K6749_07215) - 1590019..1591449 (-) 1431 WP_238970344.1 lipopolysaccharide biosynthesis protein -
  K6749_RS07235 (K6749_07220) - 1591442..1592614 (-) 1173 WP_206954077.1 glycosyltransferase -
  K6749_RS07240 (K6749_07225) - 1592626..1593810 (-) 1185 WP_238970345.1 glycosyltransferase -
  K6749_RS07245 (K6749_07230) - 1593955..1595025 (-) 1071 WP_238970347.1 glycosyltransferase family 4 protein -
  K6749_RS07250 (K6749_07235) luxO 1595000..1596526 (-) 1527 WP_213967700.1 sigma-54 dependent transcriptional regulator Regulator
  K6749_RS07255 (K6749_07240) - 1596835..1597215 (-) 381 WP_213870161.1 Hpt domain-containing protein -
  K6749_RS07260 (K6749_07245) - 1597227..1597913 (-) 687 WP_017820661.1 AAA family ATPase -
  K6749_RS07265 (K6749_07250) - 1597913..1600015 (-) 2103 WP_203346064.1 SLBB domain-containing protein -
  K6749_RS07270 (K6749_07255) - 1600012..1600878 (-) 867 WP_238970348.1 OmpA family protein -
  K6749_RS07275 (K6749_07260) - 1600905..1601225 (-) 321 WP_005389573.1 STAS domain-containing protein -

Sequence

Protein


Download         Length: 508 a.a.        Molecular weight: 56570.39 Da        Isoelectric Point: 5.9083

>NTDB_id=601230 K6749_RS07250 WP_213967700.1 1595000..1596526(-) (luxO) [Vibrio alginolyticus strain HYV1]
MRPRVLLVEDSTSLAILYKQYVKDEPYDIFHVETGREAIQFIERSKPQLIILDLKLPDMSGEDVLDWINQNDIPTSVIIA
TAHGSVDLAVNLIQKGAEDFLEKPINADRLKTSVALHLKRAKLEDLVENIQSKFDRHNYHGFIGSSLPMQAVYKTIDAVA
PTSASVFIVGESGTGKEVCAEAVHRQSDRKDKPFIAINCGAIPRDLMESEIFGHVKGAFTGATTDRKGAATLAHGGTLFL
DELCEMELEMQKKLLRFLQTGTYTPLGGTREMKVDVRIICATNRDPLTEVEEGRFREDLYYRVHVIPIDMPPLRERGSDI
VTLAKHFLTTYAKQDKKKFSTIDSEAQHIIKHYEWPGNVRQLQNIIRNIVVLNNDEKVTVSHLPAQLTKKSKVTKTTTPA
HVAQESANIAPITPPPGYTEEPSPSAVEPSINAAEQPGTPSSAATSPYFNSDGTIRPMWQVEREAIQNAIAYCDGNVLNA
AVMLELSPSTVYRKKQAWEADEINLEQS

Nucleotide


Download         Length: 1527 bp        

>NTDB_id=601230 K6749_RS07250 WP_213967700.1 1595000..1596526(-) (luxO) [Vibrio alginolyticus strain HYV1]
ATGAGACCAAGGGTGTTACTGGTAGAGGACTCTACTTCACTAGCCATACTTTATAAGCAGTATGTGAAAGACGAACCTTA
TGACATTTTTCATGTCGAGACAGGTCGCGAAGCGATTCAATTTATTGAAAGAAGCAAACCTCAGCTCATCATTCTCGATT
TGAAACTGCCCGACATGTCTGGCGAAGACGTGTTGGATTGGATCAACCAGAATGACATTCCTACGTCCGTTATTATTGCT
ACGGCACACGGCAGCGTCGACTTAGCCGTTAATCTAATTCAAAAAGGTGCGGAAGATTTCTTAGAAAAGCCCATAAACGC
TGATCGCCTAAAAACATCAGTCGCATTGCACCTCAAACGCGCCAAATTGGAAGATTTGGTGGAAAATATTCAGTCCAAGT
TTGATCGCCACAACTATCACGGATTCATCGGTTCAAGCCTCCCGATGCAGGCGGTATACAAGACCATTGATGCTGTTGCG
CCAACTTCTGCCAGTGTGTTTATTGTGGGAGAAAGCGGCACAGGTAAAGAAGTTTGTGCTGAAGCCGTCCACCGCCAGAG
CGACCGTAAAGACAAACCTTTTATTGCAATTAACTGTGGGGCTATTCCACGAGATTTGATGGAAAGTGAGATTTTTGGTC
ACGTTAAAGGGGCCTTTACTGGAGCAACAACAGATCGAAAAGGTGCGGCGACGCTGGCACATGGTGGTACGCTTTTTCTT
GATGAGCTGTGTGAAATGGAACTTGAGATGCAAAAGAAGTTGCTCCGCTTTCTACAAACGGGCACTTACACCCCTCTTGG
TGGCACTCGAGAAATGAAAGTGGATGTGAGAATCATTTGTGCCACTAACCGAGATCCATTAACAGAAGTAGAAGAAGGTC
GTTTTCGTGAAGACTTATACTACCGTGTGCACGTTATACCTATTGATATGCCCCCATTACGTGAACGAGGAAGTGACATC
GTCACGCTTGCCAAGCACTTCTTGACCACTTACGCCAAACAGGACAAAAAGAAATTCTCAACAATCGACAGCGAAGCTCA
ACATATCATCAAGCATTACGAATGGCCGGGTAATGTAAGGCAACTACAAAACATCATACGTAACATTGTGGTGCTTAATA
ACGACGAAAAAGTCACGGTGAGCCACCTACCCGCTCAACTTACTAAAAAGTCTAAAGTGACGAAAACAACGACGCCTGCG
CATGTTGCTCAAGAGTCAGCAAACATTGCACCAATCACACCACCACCTGGTTATACTGAGGAACCTTCACCTTCTGCGGT
CGAACCGTCGATTAACGCAGCGGAGCAGCCTGGTACACCGTCCTCTGCTGCTACCTCACCGTACTTTAACTCTGATGGAA
CCATTCGCCCTATGTGGCAAGTAGAGCGTGAAGCAATTCAAAACGCAATTGCGTACTGTGATGGCAACGTCCTCAACGCC
GCTGTCATGCTGGAGTTAAGCCCATCTACGGTTTACCGAAAAAAACAAGCGTGGGAAGCGGATGAAATTAATCTCGAACA
ATCTTGA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(5-114)

Sigma-54 interaction domain (Sigma54_activat)

(143-308)

Bacterial regulatory protein, Fis family (HTH_8)

(458-494)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxO Vibrio cholerae strain A1552

49.899

97.047

0.484