Detailed information    

insolico Bioinformatically predicted

Overview

Name   cqsA   Type   Regulator
Locus tag   K6748_RS21595 Genome accession   NZ_CP082308
Coordinates   1403576..1404757 (+) Length   393 a.a.
NCBI ID   WP_017635350.1    Uniprot ID   A0AAW9AJM2
Organism   Vibrio alginolyticus strain HNV2     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1398576..1409757
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K6748_RS21575 (K6748_21465) - 1398696..1399463 (-) 768 WP_206225669.1 inovirus Gp2 family protein -
  K6748_RS21580 (K6748_21470) - 1399682..1400785 (-) 1104 WP_206225668.1 Rrf2 family transcriptional regulator -
  K6748_RS21585 (K6748_21475) - 1400970..1401467 (+) 498 WP_206225667.1 ribbon-helix-helix protein, CopG family -
  K6748_RS21590 (K6748_21480) ylqF 1402294..1403238 (+) 945 WP_054866316.1 ribosome biogenesis GTPase YlqF -
  K6748_RS21595 (K6748_21485) cqsA 1403576..1404757 (+) 1182 WP_017635350.1 alpha-hydroxyketone-type quorum-sensing autoinducer synthase Regulator
  K6748_RS21600 (K6748_21490) cqsS 1404861..1406906 (-) 2046 WP_025767846.1 hybrid sensor histidine kinase/response regulator Regulator
  K6748_RS21605 (K6748_21495) - 1407270..1407887 (+) 618 WP_025767847.1 HAD family phosphatase -
  K6748_RS21610 (K6748_21500) - 1407978..1408526 (-) 549 WP_005376525.1 GNAT family N-acetyltransferase -

Sequence

Protein


Download         Length: 393 a.a.        Molecular weight: 43651.91 Da        Isoelectric Point: 6.3840

>NTDB_id=601213 K6748_RS21595 WP_017635350.1 1403576..1404757(+) (cqsA) [Vibrio alginolyticus strain HNV2]
MSETIQSKPLPSFIEERLDFYIQDLIEPNENKKHLVLGKRPPCNAVVLQSNDYLALSHNKEIQNAHRDAISQHDDNVVMS
AIFLQDDESKPVFETQLASFVGMPSCLLSQSGWAANVGLLQTICAPNIPVYIDFFAHMSLWEGARIAGAQIHPFMHNNTS
HLRKQISRHGSGIIVVDSVYSTIGTIAPLRDIYEIAQEFDCGLVVDESHSLGTHGPQGAGILQGLGLTHKVDFITVSLAK
TFAYRAGAILGPEKLAKTLPFVAYPAIFSSTVLPQEIIRLEKTLDVIRKSDDKRDILFERAKSLAVGLKRIGFTIRSESQ
IIALECGNERNTERVRDFLEERNVYGAVFCRPATGRNKNIIRFSVNADMTAAEVDHVLTVCQQAFAHPDLEFV

Nucleotide


Download         Length: 1182 bp        

>NTDB_id=601213 K6748_RS21595 WP_017635350.1 1403576..1404757(+) (cqsA) [Vibrio alginolyticus strain HNV2]
ATGAGTGAAACTATACAAAGCAAACCACTTCCCTCCTTTATCGAGGAACGCCTAGATTTTTATATTCAAGATCTAATCGA
ACCGAATGAGAACAAAAAACACCTTGTTCTTGGTAAACGCCCACCGTGTAATGCCGTTGTCCTGCAAAGCAATGATTACC
TTGCACTGTCTCATAATAAGGAGATTCAAAACGCGCATCGTGATGCGATTTCCCAGCACGATGACAACGTCGTGATGTCC
GCGATTTTCTTACAAGACGATGAATCGAAACCTGTATTTGAAACGCAACTAGCCAGTTTCGTTGGTATGCCTAGTTGTCT
ACTTTCTCAATCTGGTTGGGCTGCGAATGTCGGTTTATTGCAGACTATTTGTGCACCGAACATACCTGTGTACATTGATT
TCTTTGCACATATGTCTTTGTGGGAAGGCGCACGTATTGCCGGAGCACAAATTCATCCGTTCATGCATAACAACACCAGT
CACCTAAGAAAACAGATTTCACGTCACGGTTCAGGGATCATTGTTGTGGATTCGGTTTACAGCACTATCGGGACCATCGC
TCCTCTACGTGATATCTACGAAATAGCACAGGAGTTTGACTGCGGCCTGGTTGTAGATGAATCACACTCTTTAGGTACAC
ACGGTCCACAAGGTGCGGGGATACTGCAGGGTCTTGGCTTAACTCATAAGGTAGATTTTATTACCGTTAGTCTTGCCAAG
ACATTTGCTTATCGTGCTGGCGCGATTTTAGGCCCAGAAAAACTGGCGAAGACGCTTCCATTTGTGGCGTACCCTGCAAT
ATTTAGTTCTACCGTATTACCGCAAGAGATCATTCGGCTAGAGAAAACACTGGACGTCATAAGAAAATCAGATGATAAGC
GAGATATTCTGTTTGAAAGAGCCAAGTCTTTAGCCGTTGGTTTAAAACGCATTGGATTTACTATTCGCAGTGAATCACAA
ATTATCGCATTAGAATGTGGTAACGAGAGAAACACTGAGCGAGTCCGCGACTTTCTCGAAGAGCGAAATGTTTACGGCGC
AGTGTTTTGCCGCCCTGCAACTGGAAGGAACAAAAACATCATCCGTTTTTCAGTCAATGCAGACATGACAGCTGCTGAAG
TTGATCATGTACTCACTGTCTGCCAACAAGCATTTGCACACCCTGACTTAGAGTTTGTGTAA

Domains

Predicted by InterproScan.

Aminotransferase class I and II (Aminotran_1_2)

(46-378)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cqsA Vibrio cholerae strain A1552

57.623

98.473

0.567