Detailed information    

insolico Bioinformatically predicted

Overview

Name   cytR   Type   Regulator
Locus tag   K6748_RS13870 Genome accession   NZ_CP082307
Coordinates   2973181..2974209 (+) Length   342 a.a.
NCBI ID   WP_254901949.1    Uniprot ID   -
Organism   Vibrio alginolyticus strain HNV2     
Function   promote competence gene expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 2968181..2979209
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K6748_RS13850 (K6748_13765) rplC 2968744..2969373 (-) 630 WP_005379555.1 50S ribosomal protein L3 -
  K6748_RS13855 (K6748_13770) rpsJ 2969388..2969699 (-) 312 WP_004410492.1 30S ribosomal protein S10 -
  K6748_RS13860 (K6748_13775) rpmE 2970156..2970377 (-) 222 WP_005379546.1 50S ribosomal protein L31 -
  K6748_RS13865 (K6748_13780) priA 2970673..2972877 (+) 2205 WP_054579274.1 primosomal protein N' -
  K6748_RS13870 (K6748_13785) cytR 2973181..2974209 (+) 1029 WP_254901949.1 DNA-binding transcriptional regulator CytR Regulator
  K6748_RS13875 (K6748_13790) ftsN 2974435..2974983 (+) 549 WP_017820300.1 cell division protein FtsN -
  K6748_RS13880 (K6748_13795) hslV 2975099..2975650 (+) 552 WP_025768350.1 ATP-dependent protease subunit HslV -
  K6748_RS13885 (K6748_13800) hslU 2975674..2977005 (+) 1332 WP_025768349.1 HslU--HslV peptidase ATPase subunit -

Sequence

Protein


Download         Length: 342 a.a.        Molecular weight: 37765.46 Da        Isoelectric Point: 6.4948

>NTDB_id=601203 K6748_RS13870 WP_254901949.1 2973181..2974209(+) (cytR) [Vibrio alginolyticus strain HNV2]
MNERLKTMATMKDVAQLAGVSTATVSRALMNPEKVSSSTRKRVEDAVLEAGYSPNSLARNLRRNESKTIVTIVPDICDPY
FSEIIRGIEDAAMEHGYLVLLGDSGQQKKRESSFVNLVFTKQADGMLLLGTDLPFDVSKPEQKNLPPMVMACEFAPELEL
PTVHIDNLTSAFEAVNYLTQLGHKRIAQISGPDTAILCQFRQQGYQQALRRAGINKDPQYSVITEFSFDGGAKAVRKLLE
LPEPPTAIFCHCDTMAIGAIQEAKKLGLRVPQDLSVVGFDDINFAQYCDPPLTTISQPRYEIGRQAMLMMLEMLKGHDVH
SGSRLLETNLVIRGSAAPPQRP

Nucleotide


Download         Length: 1029 bp        

>NTDB_id=601203 K6748_RS13870 WP_254901949.1 2973181..2974209(+) (cytR) [Vibrio alginolyticus strain HNV2]
ATAAATGAGAGGTTAAAAACTATGGCGACAATGAAGGATGTTGCCCAGCTTGCGGGAGTGTCTACGGCTACGGTATCTCG
AGCCTTAATGAATCCAGAGAAAGTCTCTTCTTCTACAAGAAAGAGAGTAGAAGATGCCGTACTTGAAGCGGGTTATTCTC
CAAACTCATTAGCGCGTAACTTACGTAGAAACGAATCAAAAACCATTGTTACTATCGTTCCCGACATCTGTGATCCTTAT
TTTTCTGAAATTATTCGCGGTATTGAAGATGCAGCCATGGAACATGGCTATCTAGTCCTGCTGGGCGATAGCGGACAACA
GAAGAAACGCGAAAGCTCTTTCGTTAACCTCGTATTTACTAAGCAGGCAGATGGAATGCTACTGCTTGGTACAGATCTAC
CATTCGATGTCAGTAAGCCAGAGCAAAAGAACTTACCTCCGATGGTAATGGCGTGTGAATTTGCGCCAGAGCTCGAGCTT
CCGACAGTACATATTGATAACCTGACCTCAGCATTTGAAGCAGTGAATTACCTGACCCAATTAGGTCATAAACGCATTGC
TCAAATCTCTGGACCAGACACAGCAATATTGTGTCAGTTCCGCCAGCAAGGCTACCAACAAGCCCTGCGCCGTGCCGGCA
TCAATAAAGATCCACAATATAGTGTCATTACTGAGTTCTCTTTTGATGGCGGAGCAAAAGCCGTTCGTAAACTGCTCGAA
TTGCCAGAACCACCAACGGCTATTTTCTGTCACTGTGACACAATGGCCATCGGCGCAATTCAAGAAGCGAAAAAGCTTGG
CTTACGAGTACCGCAAGATCTCTCTGTTGTGGGCTTTGATGACATTAACTTCGCTCAGTACTGCGATCCACCGTTGACCA
CCATCTCTCAACCTCGCTATGAGATTGGTCGACAAGCGATGCTAATGATGCTCGAGATGTTAAAAGGCCACGACGTGCAT
TCAGGCTCGCGTCTGCTTGAAACTAATCTCGTCATTCGTGGAAGTGCAGCGCCACCACAGCGACCTTAA

Domains

Predicted by InterproScan.

Periplasmic binding protein-like domain (Peripla_BP_3)

(175-335)

Bacterial regulatory proteins, lacI family (LacI)

(10-55)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cytR Vibrio parahaemolyticus RIMD 2210633

97.935

99.123

0.971
  cytR Vibrio cholerae C6706

89.521

97.661

0.874