Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   K6748_RS02785 Genome accession   NZ_CP082307
Coordinates   574566..575084 (+) Length   172 a.a.
NCBI ID   WP_005379945.1    Uniprot ID   A0AAW7A9V7
Organism   Vibrio alginolyticus strain HNV2     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 569566..580084
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K6748_RS02775 (K6748_02775) gshA 572284..573852 (+) 1569 WP_205461133.1 glutamate--cysteine ligase -
  K6748_RS02780 (K6748_02780) - 573876..574481 (+) 606 WP_005379943.1 hypothetical protein -
  K6748_RS02785 (K6748_02785) luxS 574566..575084 (+) 519 WP_005379945.1 S-ribosylhomocysteine lyase Regulator
  K6748_RS02790 (K6748_02790) - 575155..576435 (-) 1281 WP_005379948.1 CNNM domain-containing protein -
  K6748_RS02795 (K6748_02795) - 576560..577354 (-) 795 WP_005379950.1 inner membrane protein YpjD -
  K6748_RS02800 (K6748_02800) ffh 577579..578961 (+) 1383 WP_005385423.1 signal recognition particle protein -
  K6748_RS02805 (K6748_02805) rpsP 579171..579419 (+) 249 WP_005379962.1 30S ribosomal protein S16 -
  K6748_RS02810 (K6748_02810) rimM 579449..579997 (+) 549 WP_005379964.1 ribosome maturation factor RimM -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 19132.87 Da        Isoelectric Point: 4.7221

>NTDB_id=601183 K6748_RS02785 WP_005379945.1 574566..575084(+) (luxS) [Vibrio alginolyticus strain HNV2]
MPLLDSFTVDHTRMNAPAVRVAKTMQTPKGDTITVFDLRFTAPNKDILSEKGIHTLEHLYAGFMRNHLNDDSVEIIDISP
MGCRTGFYMSLIGTPSEQQVADAWIAAMEDVLKVESQNKIPELNEYQCGTAAMHSLKEAQQIAKNILDAGVSVNKNDELA
LPESMLKELRID

Nucleotide


Download         Length: 519 bp        

>NTDB_id=601183 K6748_RS02785 WP_005379945.1 574566..575084(+) (luxS) [Vibrio alginolyticus strain HNV2]
ATGCCTTTACTCGATAGTTTTACCGTGGACCACACTCGTATGAATGCACCCGCTGTACGAGTGGCGAAAACCATGCAGAC
CCCAAAAGGGGATACGATTACTGTTTTCGACTTACGCTTTACTGCGCCAAACAAAGACATTCTTTCTGAAAAAGGTATTC
ACACCCTAGAGCACCTTTATGCAGGCTTTATGCGTAATCACCTAAACGATGATTCTGTTGAGATCATCGATATTTCGCCT
ATGGGTTGCCGCACAGGTTTTTACATGAGCCTGATTGGCACACCATCAGAGCAGCAAGTCGCAGATGCTTGGATTGCAGC
AATGGAAGATGTGCTGAAGGTAGAAAGTCAGAATAAGATCCCTGAACTTAACGAATACCAATGCGGCACGGCAGCAATGC
ACTCTTTAAAAGAAGCACAACAGATCGCAAAGAACATTTTGGATGCTGGTGTTTCGGTGAACAAAAATGATGAACTTGCT
TTGCCTGAGTCGATGTTAAAAGAGTTGCGCATCGACTAG

Domains

Predicted by InterproScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-154)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

86.55

99.419

0.86