Detailed information    

insolico Bioinformatically predicted

Overview

Name   braR   Type   Regulator
Locus tag   M5C73_RS09565 Genome accession   NZ_CP098790
Coordinates   1944257..1944928 (-) Length   223 a.a.
NCBI ID   WP_003132782.1    Uniprot ID   Q9CET7
Organism   Lactococcus lactis strain WiKim0124     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1939257..1949928
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M5C73_RS09540 (M5C73_09540) pheA 1939562..1940401 (-) 840 WP_058203948.1 prephenate dehydratase -
  M5C73_RS09545 (M5C73_09545) - 1940403..1940891 (-) 489 WP_143459552.1 shikimate kinase -
  M5C73_RS09550 (M5C73_09550) aroA 1940915..1942207 (-) 1293 WP_252160073.1 3-phosphoshikimate 1-carboxyvinyltransferase -
  M5C73_RS09555 (M5C73_09555) - 1942328..1943392 (-) 1065 WP_058203551.1 prephenate dehydrogenase -
  M5C73_RS09560 (M5C73_09560) - 1943395..1944270 (-) 876 WP_012898325.1 sensor histidine kinase -
  M5C73_RS09565 (M5C73_09565) braR 1944257..1944928 (-) 672 WP_003132782.1 response regulator transcription factor Regulator
  M5C73_RS09570 (M5C73_09570) - 1944931..1945995 (-) 1065 WP_252160074.1 VanZ family protein -
  M5C73_RS09575 (M5C73_09575) - 1946176..1948176 (-) 2001 WP_029344276.1 FtsX-like permease family protein -
  M5C73_RS09580 (M5C73_09580) - 1948169..1948948 (-) 780 WP_012898329.1 ABC transporter ATP-binding protein -
  M5C73_RS09585 (M5C73_09585) - 1948963..1949106 (-) 144 WP_014570691.1 hypothetical protein -
  M5C73_RS09590 (M5C73_09590) - 1949137..1949496 (-) 360 WP_129881044.1 YxeA family protein -

Sequence

Protein


Download         Length: 223 a.a.        Molecular weight: 25510.44 Da        Isoelectric Point: 4.8093

>NTDB_id=601171 M5C73_RS09565 WP_003132782.1 1944257..1944928(-) (braR) [Lactococcus lactis strain WiKim0124]
MTKIFIVEDDEIIVKAIKIALEKEFQVRSVSNFRAVKQEIMEFEADLVLMDIGLPFYSGFYWTNELRKLSQIPIIFISSA
SDDMNQVTAMNQGADDFVTKPFSLEILNAKIKALLRRSYSFSGIEKLEFAGYVLSENTLISTQEGEREEIELTSSENKIL
TLLFRGNGEVVTKEKILQELWQTDEFIDANTLNVKMTRLRKKLGEIGFDKHIMTKRGSGYALV

Nucleotide


Download         Length: 672 bp        

>NTDB_id=601171 M5C73_RS09565 WP_003132782.1 1944257..1944928(-) (braR) [Lactococcus lactis strain WiKim0124]
ATGACTAAAATATTTATTGTAGAAGATGATGAAATTATTGTGAAAGCAATTAAGATTGCCTTAGAAAAAGAATTTCAAGT
CAGAAGTGTTTCCAATTTTCGAGCAGTAAAACAAGAAATTATGGAATTTGAAGCAGATTTAGTATTAATGGATATTGGGC
TACCATTTTATAGTGGTTTTTATTGGACAAATGAATTAAGAAAGCTTTCCCAAATTCCTATTATCTTTATTTCTTCGGCA
TCGGATGACATGAATCAAGTAACCGCTATGAATCAAGGAGCTGATGATTTTGTAACCAAGCCATTTTCATTAGAAATTTT
AAATGCAAAAATAAAAGCTTTACTGCGCAGAAGTTATTCTTTTTCAGGGATTGAAAAGTTAGAATTTGCTGGTTATGTTT
TATCTGAAAATACTTTGATTTCAACTCAAGAAGGTGAACGCGAAGAAATTGAGCTAACAAGTTCTGAAAATAAAATTTTA
ACTCTTCTTTTTCGTGGAAATGGTGAAGTGGTGACCAAGGAAAAAATTCTACAAGAGTTGTGGCAAACAGATGAATTTAT
TGATGCAAATACTTTAAATGTAAAAATGACTCGTTTACGCAAAAAACTTGGTGAAATTGGCTTTGATAAGCATATTATGA
CAAAAAGAGGAAGTGGTTATGCTCTGGTTTAA

Domains

Predicted by InterProScan.

Transcriptional regulatory protein, C terminal (Trans_reg_C)

(148-222)

Response regulator receiver domain (Response_reg)

(4-111)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q9CET7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  braR Staphylococcus aureus N315

41.441

99.552

0.413