Detailed information    

insolico Bioinformatically predicted

Overview

Name   irvR   Type   Regulator
Locus tag   M5C73_RS03025 Genome accession   NZ_CP098790
Coordinates   587819..588373 (-) Length   184 a.a.
NCBI ID   WP_058204350.1    Uniprot ID   -
Organism   Lactococcus lactis strain WiKim0124     
Function   regulate expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 582819..593373
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M5C73_RS03005 (M5C73_03005) - 583768..584436 (+) 669 WP_252160247.1 hypothetical protein -
  M5C73_RS03010 (M5C73_03010) - 584606..585502 (+) 897 WP_003129543.1 SPFH domain-containing protein -
  M5C73_RS03020 (M5C73_03020) - 587221..587808 (-) 588 WP_058204349.1 hypothetical protein -
  M5C73_RS03025 (M5C73_03025) irvR 587819..588373 (-) 555 WP_058204350.1 helix-turn-helix domain-containing protein Regulator
  M5C73_RS03030 (M5C73_03030) - 588925..589095 (-) 171 WP_165379817.1 hypothetical protein -
  M5C73_RS03035 (M5C73_03035) - 589161..589367 (+) 207 WP_058204351.1 helix-turn-helix transcriptional regulator -
  M5C73_RS03040 (M5C73_03040) - 589422..590173 (+) 752 Protein_566 phage antirepressor KilAC domain-containing protein -
  M5C73_RS03045 (M5C73_03045) - 590278..590463 (+) 186 WP_226319369.1 phage replisome organizer N-terminal domain-containing protein -
  M5C73_RS03050 (M5C73_03050) - 590511..591098 (+) 588 WP_252160248.1 DnaD domain protein -
  M5C73_RS03055 (M5C73_03055) - 591306..591398 (+) 93 WP_081043124.1 DUF1660 family phage protein -
  M5C73_RS03060 (M5C73_03060) - 591482..591871 (+) 390 WP_058204354.1 DUF722 domain-containing protein -
  M5C73_RS03065 (M5C73_03065) - 592149..593306 (+) 1158 WP_058204355.1 glycoside hydrolase family protein -

Sequence

Protein


Download         Length: 184 a.a.        Molecular weight: 20952.69 Da        Isoelectric Point: 4.9034

>NTDB_id=601137 M5C73_RS03025 WP_058204350.1 587819..588373(-) (irvR) [Lactococcus lactis strain WiKim0124]
MGRGKSTPQDEAMRTIVSSNIKKYLDIKKKKAVDLQKNTGISQSSISEYINGKSLPNPGNLQKIADFFGVLREDIDPRHS
EDWEEPEELPDIIQRITDISMQLEEPRQKVVLNTASSQLKEQEKENAKVVSLRTEKQKQGIDLADLVDESKVDWDKWVSF
DGKPLTDEVKEAMKQVLGKQLEDK

Nucleotide


Download         Length: 555 bp        

>NTDB_id=601137 M5C73_RS03025 WP_058204350.1 587819..588373(-) (irvR) [Lactococcus lactis strain WiKim0124]
ATGGGACGTGGGAAATCAACTCCGCAAGATGAAGCAATGCGAACAATAGTTTCTTCTAATATAAAAAAATATTTAGATAT
AAAAAAGAAGAAAGCAGTTGACTTACAAAAGAATACAGGTATATCTCAAAGCTCAATTAGTGAATATATAAATGGTAAAT
CCCTACCTAATCCTGGTAATCTTCAAAAAATAGCTGATTTCTTCGGTGTTCTTAGAGAGGATATTGACCCTAGACATTCT
GAGGATTGGGAAGAACCTGAAGAATTGCCAGACATTATCCAACGAATAACTGATATATCTATGCAACTTGAAGAACCAAG
ACAAAAAGTCGTTCTTAATACTGCTTCTTCTCAATTGAAAGAGCAAGAAAAGGAAAATGCTAAGGTTGTATCTCTTAGAA
CTGAAAAACAAAAGCAAGGTATTGACCTTGCCGATTTAGTAGATGAAAGTAAAGTTGATTGGGATAAGTGGGTTTCATTT
GATGGTAAGCCATTAACTGATGAAGTTAAGGAAGCTATGAAACAAGTCCTTGGAAAGCAATTAGAAGACAAATAA

Domains

Predicted by InterProScan.

Helix-turn-helix (HTH_3)

(21-70)

Lactococcus bacteriophage repressor (Lac_bphage_repr)

(136-183)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  irvR Streptococcus mutans UA159

36.598

100

0.386