Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxO   Type   Regulator
Locus tag   K6745_RS07250 Genome accession   NZ_CP082303
Coordinates   1587435..1588961 (-) Length   508 a.a.
NCBI ID   WP_025766673.1    Uniprot ID   A0AAW7A8R2
Organism   Vibrio alginolyticus strain FJV2     
Function   promote HapR production (predicted from homology)   
Competence regulation

Genomic Context

Location: 1582435..1593961
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K6745_RS07230 (K6745_07205) - 1582454..1583884 (-) 1431 WP_025766678.1 lipopolysaccharide biosynthesis protein -
  K6745_RS07235 (K6745_07210) - 1583877..1585049 (-) 1173 WP_025766677.1 glycosyltransferase -
  K6745_RS07240 (K6745_07215) - 1585061..1586245 (-) 1185 WP_025766676.1 glycosyltransferase -
  K6745_RS07245 (K6745_07220) - 1586390..1587460 (-) 1071 WP_025766675.1 glycosyltransferase family 4 protein -
  K6745_RS07250 (K6745_07225) luxO 1587435..1588961 (-) 1527 WP_025766673.1 sigma-54-dependent transcriptional regulator Regulator
  K6745_RS07255 (K6745_07230) - 1589270..1589650 (-) 381 WP_005377636.1 Hpt domain-containing protein -
  K6745_RS07260 (K6745_07235) - 1589662..1590348 (-) 687 WP_025766671.1 AAA family ATPase -
  K6745_RS07265 (K6745_07240) - 1590348..1592450 (-) 2103 WP_017820662.1 SLBB domain-containing protein -
  K6745_RS07270 (K6745_07245) - 1592447..1593313 (-) 867 WP_017634930.1 OmpA family protein -
  K6745_RS07275 (K6745_07250) - 1593340..1593660 (-) 321 WP_017634929.1 STAS domain-containing protein -

Sequence

Protein


Download         Length: 508 a.a.        Molecular weight: 56610.46 Da        Isoelectric Point: 5.7925

>NTDB_id=601137 K6745_RS07250 WP_025766673.1 1587435..1588961(-) (luxO) [Vibrio alginolyticus strain FJV2]
MRPRVLLVEDSTSLAILYKQYVKDEPYDIFHVETGREAIQFIERSKPQLIILDLKLPDMSGEDVLDWINQNDIPTSVIIA
TAHGSVDLAVNLIQKGAEDFLEKPINADRLKTSVALHLKRAKLEDLVENIQSKFDRHNYHGFIGSSLPMQAVYKTIDAVA
PTSASVFIVGESGTGKEVCAEAVHRQSDRKDKPFIAINCGAIPRDLMESEIFGHVKGAFTGATTDRKGAATLAHGGTLFL
DELCEMELEMQKKLLRFLQTGTYTPLGGTREMKVDVRIICATNRDPLTEVEEGRFREDLYYRVHVIPIDMPPLRERGSDI
VTLAKYFLTTYAKQDKKKFSTIDSEAQHIIKHYEWPGNVRQLQNIIRNIVVLNNDEKVTVNHLPAQLTKKSKVTKTTTPA
HVAQESANIAPITPPPGYTEEPSPSAVEPSITAAEQPGTPSSAATSPYFNSDGTIRPMWQVEREAIQNAIAYCDGNVLNA
AVMLELSPSTVYRKKQAWEADEINLEQS

Nucleotide


Download         Length: 1527 bp        

>NTDB_id=601137 K6745_RS07250 WP_025766673.1 1587435..1588961(-) (luxO) [Vibrio alginolyticus strain FJV2]
ATGAGACCAAGGGTGTTACTGGTAGAGGACTCTACTTCACTAGCCATACTTTATAAGCAGTATGTGAAAGACGAACCTTA
TGACATTTTTCATGTCGAGACAGGTCGCGAAGCGATTCAATTTATTGAAAGAAGCAAACCTCAGCTCATCATTCTCGATT
TGAAACTGCCCGACATGTCTGGCGAAGACGTGTTGGATTGGATCAACCAGAATGACATTCCTACGTCCGTTATTATTGCT
ACGGCACACGGCAGCGTCGACTTAGCCGTTAATCTAATTCAAAAAGGTGCGGAAGATTTCTTAGAAAAGCCCATAAACGC
TGATCGCCTAAAAACATCAGTCGCATTGCACCTCAAACGCGCCAAATTGGAAGATTTGGTGGAAAATATTCAGTCCAAGT
TTGATCGCCACAACTATCACGGATTCATCGGTTCAAGCCTCCCGATGCAGGCGGTATACAAGACCATTGATGCTGTTGCG
CCAACTTCTGCCAGTGTGTTTATTGTGGGAGAAAGCGGCACAGGTAAAGAAGTTTGTGCTGAAGCCGTCCACCGCCAGAG
CGACCGTAAAGACAAGCCTTTTATTGCAATTAACTGTGGGGCTATTCCACGAGATTTGATGGAAAGTGAGATTTTTGGTC
ACGTTAAAGGGGCCTTTACTGGAGCAACAACAGATCGAAAAGGTGCGGCGACGCTGGCACATGGTGGTACGCTTTTTCTT
GATGAGCTGTGTGAAATGGAACTTGAGATGCAAAAGAAGTTGCTCCGTTTTCTACAAACGGGCACTTACACCCCTCTTGG
TGGCACTCGAGAAATGAAAGTAGATGTGAGAATCATTTGTGCCACTAACCGAGATCCATTAACAGAGGTAGAAGAAGGTC
GTTTTCGTGAAGACTTATACTACCGTGTGCACGTTATACCTATCGATATGCCCCCATTACGTGAACGAGGAAGTGACATT
GTCACGCTTGCCAAGTACTTCTTGACCACTTACGCCAAACAGGACAAAAAGAAATTCTCAACAATCGACAGCGAAGCTCA
ACATATCATCAAGCATTACGAATGGCCGGGTAATGTAAGGCAACTACAAAACATCATACGTAACATTGTGGTGCTTAATA
ACGACGAAAAAGTCACGGTGAACCACCTACCCGCTCAACTTACTAAAAAGTCTAAAGTGACGAAAACAACGACGCCTGCG
CATGTTGCTCAAGAGTCAGCAAACATTGCACCAATCACACCACCACCTGGTTATACTGAGGAACCTTCACCTTCTGCGGT
CGAACCGTCGATTACCGCAGCGGAGCAGCCTGGTACACCGTCCTCTGCTGCTACCTCACCGTACTTTAACTCTGATGGAA
CCATTCGCCCTATGTGGCAAGTAGAGCGTGAAGCAATTCAAAACGCAATTGCGTACTGTGATGGCAACGTCCTCAACGCC
GCTGTCATGCTGGAGTTAAGCCCATCGACGGTTTACCGAAAAAAACAAGCGTGGGAAGCGGATGAAATTAATCTCGAACA
ATCTTGA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(5-114)

Sigma-54 interaction domain (Sigma54_activat)

(143-308)

Bacterial regulatory protein, Fis family (HTH_8)

(458-494)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxO Vibrio cholerae strain A1552

49.899

97.047

0.484