Detailed information    

insolico Bioinformatically predicted

Overview

Name   cytR   Type   Regulator
Locus tag   NEH83_RS32605 Genome accession   NZ_CP098783
Coordinates   7351790..7352812 (-) Length   340 a.a.
NCBI ID   WP_030076481.1    Uniprot ID   A0ABW2MCF5
Organism   Streptomyces sp. JUS-F4     
Function   promote competence gene expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 7346790..7357812
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NEH83_RS32580 (NEH83_32610) - 7347677..7349760 (+) 2084 Protein_6440 ATP-binding protein -
  NEH83_RS32585 (NEH83_32615) - 7349766..7350200 (+) 435 WP_030582309.1 roadblock/LC7 domain-containing protein -
  NEH83_RS32590 (NEH83_32620) - 7350203..7350574 (+) 372 WP_030076475.1 DUF742 domain-containing protein -
  NEH83_RS32595 (NEH83_32625) - 7350552..7351175 (+) 624 WP_030623183.1 ATP/GTP-binding protein -
  NEH83_RS32600 (NEH83_32630) - 7351172..7351756 (+) 585 WP_103538011.1 GAF domain-containing protein -
  NEH83_RS32605 (NEH83_32635) cytR 7351790..7352812 (-) 1023 WP_030076481.1 LacI family DNA-binding transcriptional regulator Regulator
  NEH83_RS32610 (NEH83_32640) - 7353066..7353929 (+) 864 WP_193462773.1 ABC transporter permease -
  NEH83_RS32615 (NEH83_32645) - 7353966..7354985 (+) 1020 WP_030076485.1 ABC transporter substrate-binding protein -
  NEH83_RS32620 (NEH83_32650) - 7354982..7355812 (+) 831 WP_030623174.1 ABC transporter ATP-binding protein -
  NEH83_RS32625 (NEH83_32655) - 7356231..7357181 (+) 951 WP_030076491.1 NAD-dependent epimerase/dehydratase family protein -

Sequence

Protein


Download         Length: 340 a.a.        Molecular weight: 35581.80 Da        Isoelectric Point: 9.1369

>NTDB_id=601111 NEH83_RS32605 WP_030076481.1 7351790..7352812(-) (cytR) [Streptomyces sp. JUS-F4]
MTLDAVAREAGVSLATASRALNGTTRVRDDLRGRVRAAADLLGYIPNAHAQALASAEGNRTVGLICHDVGDPYFAGIAGG
VMRAAAEQDLLVMLASTFREPAREIAYVSMLRAQRARAILLIGSGFQDRAWERAMDAELEPYVRAGGRVAVVSRHRSMRV
DTVQPENRAGAAALAASLVALGHREFAVLSGPPELTTVADRLTGFREGLAGAGITLERVVRGAFTREGGHTATRQLLAAG
GPRPTCLFAVTDVMAVGALAALREAGIRVPEDMSLAGFDDIPVVREVSPPLTTVALPLTEMGEQVIALALRTPSGAGRSR
VLRIEGNVVLRGSTGAPPGS

Nucleotide


Download         Length: 1023 bp        

>NTDB_id=601111 NEH83_RS32605 WP_030076481.1 7351790..7352812(-) (cytR) [Streptomyces sp. JUS-F4]
GTGACGCTCGACGCGGTGGCGCGCGAGGCGGGCGTCTCGCTGGCCACCGCGTCCCGGGCGCTGAACGGCACCACCCGGGT
CCGCGACGATCTGCGCGGCCGGGTCCGCGCGGCGGCCGATCTGCTCGGCTACATCCCCAACGCCCACGCCCAGGCCCTGG
CGAGCGCCGAGGGGAACCGTACGGTCGGGCTGATCTGCCACGACGTCGGCGATCCCTACTTCGCGGGCATCGCCGGCGGG
GTGATGCGCGCGGCCGCCGAACAGGATCTGCTGGTGATGCTCGCCTCCACCTTCCGCGAACCCGCCCGTGAGATCGCGTA
CGTCTCGATGCTGCGGGCCCAGCGCGCGCGGGCCATCCTGCTGATCGGCTCCGGCTTCCAGGACCGGGCCTGGGAGCGGG
CGATGGACGCGGAGCTGGAGCCGTACGTCCGGGCCGGCGGGCGGGTCGCGGTGGTCAGCCGGCACCGGTCCATGCGGGTG
GACACCGTGCAGCCGGAGAACCGGGCCGGGGCGGCGGCGCTCGCGGCCTCGCTGGTGGCGCTGGGGCACCGGGAGTTCGC
GGTACTGAGCGGGCCGCCCGAACTGACCACGGTGGCCGACCGGTTGACCGGATTCCGCGAGGGGCTGGCCGGGGCGGGCA
TCACCCTGGAGCGGGTGGTGCGGGGCGCGTTCACCCGGGAGGGCGGGCACACGGCGACACGGCAACTGCTGGCCGCCGGG
GGGCCGCGGCCGACCTGTCTGTTCGCGGTGACCGATGTGATGGCGGTCGGCGCGCTCGCCGCGCTGCGGGAGGCCGGCAT
ACGCGTGCCCGAGGACATGTCGCTCGCGGGCTTCGACGACATCCCCGTCGTACGCGAGGTGTCGCCGCCGCTGACCACGG
TGGCGCTGCCGCTCACCGAGATGGGCGAGCAGGTGATCGCCCTCGCGTTGCGGACACCGTCGGGAGCGGGGCGCTCCCGG
GTGCTGCGGATCGAGGGGAACGTGGTCCTGCGGGGCAGCACCGGTGCGCCGCCCGGGAGTTGA

Domains

Predicted by InterProScan.

Periplasmic binding protein-like domain (Peripla_BP_3)

(177-334)

Bacterial regulatory proteins, lacI family (LacI)

(2-47)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cytR Vibrio cholerae C6706

35.735

100

0.365