Detailed information    

insolico Bioinformatically predicted

Overview

Name   dinR/lexA   Type   Regulator
Locus tag   NEH83_RS28570 Genome accession   NZ_CP098783
Coordinates   6433428..6434225 (-) Length   265 a.a.
NCBI ID   WP_010072358.1    Uniprot ID   A0ABZ1ZGP1
Organism   Streptomyces sp. JUS-F4     
Function   repressor of recA; repressor of dinR (predicted from homology)   
Homologous recombination

Genomic Context

Location: 6428428..6439225
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NEH83_RS28555 (NEH83_28590) - 6428510..6429319 (+) 810 WP_302215313.1 GNAT family N-acetyltransferase -
  NEH83_RS28560 (NEH83_28595) - 6429380..6431311 (+) 1932 WP_302215316.1 IucA/IucC family siderophore biosynthesis protein -
  NEH83_RS28565 (NEH83_28600) - 6431350..6433320 (+) 1971 WP_302215318.1 ATP-dependent DNA helicase -
  NEH83_RS28570 (NEH83_28605) dinR/lexA 6433428..6434225 (-) 798 WP_010072358.1 transcriptional repressor LexA Regulator
  NEH83_RS28575 (NEH83_28610) nrdR 6434716..6435228 (+) 513 WP_030633345.1 transcriptional regulator NrdR -
  NEH83_RS28580 (NEH83_28615) - 6435403..6438300 (+) 2898 WP_030080122.1 vitamin B12-dependent ribonucleotide reductase -
  NEH83_RS28585 (NEH83_28620) - 6438424..6438960 (-) 537 WP_030633343.1 TerD family protein -

Sequence

Protein


Download         Length: 265 a.a.        Molecular weight: 28777.52 Da        Isoelectric Point: 7.4761

>NTDB_id=601102 NEH83_RS28570 WP_010072358.1 6433428..6434225(-) (dinR/lexA) [Streptomyces sp. JUS-F4]
MTTTADSATITARDHRSQSRLEPVHAMNDSVTNTDGPEPARPGRSMPGRPPGIRADSSGLTDRQRRVIEVIRDSVQRRGY
PPSMREIGQAVGLSSTSSVAHQLMALERKGFLRRDPHRPRAYEVRGSDQPSTQPTDTTGKPAASYVPLVGRIAAGGPILA
EESVEDVFPLPRQLVGDGELFVLKVVGDSMIEAAICDGDWVTVRRQPVAENGDIVAAMLDGEATVKRFRREDGHVWLLPH
NAAYQPIPGDEATILGKVVAVLRRV

Nucleotide


Download         Length: 798 bp        

>NTDB_id=601102 NEH83_RS28570 WP_010072358.1 6433428..6434225(-) (dinR/lexA) [Streptomyces sp. JUS-F4]
GTGACCACCACCGCAGACAGTGCCACCATCACCGCCCGGGACCACCGCTCCCAGAGCCGACTTGAGCCGGTGCATGCCAT
GAATGACTCAGTCACGAACACGGACGGGCCCGAGCCCGCACGCCCGGGACGATCCATGCCCGGCAGGCCTCCCGGCATCC
GGGCGGACAGCTCGGGGCTCACCGACCGGCAGCGGCGGGTCATCGAGGTCATCCGGGACTCCGTGCAGCGGCGAGGGTAC
CCGCCCTCCATGCGGGAGATCGGTCAGGCGGTGGGTCTGTCCAGCACCTCGTCCGTCGCCCATCAGCTGATGGCGCTGGA
GCGCAAGGGCTTCCTGCGCCGGGACCCGCACCGGCCGCGGGCCTACGAGGTGCGCGGCTCCGACCAGCCCAGCACCCAGC
CGACCGACACCACGGGCAAGCCCGCCGCGTCCTATGTGCCGCTGGTGGGCCGGATCGCCGCCGGTGGCCCGATCCTGGCG
GAGGAGTCCGTCGAGGACGTCTTCCCGCTCCCCCGCCAGCTCGTCGGCGACGGTGAGCTGTTCGTTCTGAAGGTCGTCGG
CGACTCGATGATCGAGGCCGCGATCTGTGACGGCGACTGGGTCACCGTCCGCCGCCAGCCCGTCGCGGAGAACGGGGACA
TCGTCGCCGCCATGCTCGACGGCGAGGCGACGGTCAAGCGCTTCCGCCGGGAGGACGGTCACGTTTGGCTGCTCCCTCAC
AACGCCGCGTACCAGCCGATCCCCGGCGACGAGGCGACCATCCTGGGCAAGGTGGTGGCGGTGCTGCGCCGCGTCTGA

Domains

Predicted by InterProScan.

Peptidase S24-like (Peptidase_S24)

(147-259)

LexA DNA binding domain (LexA_DNA_bind)

(58-121)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dinR/lexA Bacillus subtilis subsp. subtilis str. 168

46.226

80

0.37