Detailed information    

insolico Bioinformatically predicted

Overview

Name   recF   Type   Machinery gene
Locus tag   NEH83_RS18170 Genome accession   NZ_CP098783
Coordinates   4120117..4121247 (-) Length   376 a.a.
NCBI ID   WP_030077232.1    Uniprot ID   A0ABW2MIR1
Organism   Streptomyces sp. JUS-F4     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4115117..4126247
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NEH83_RS18160 (NEH83_18185) gyrB 4116903..4118972 (-) 2070 WP_030077228.1 DNA topoisomerase (ATP-hydrolyzing) subunit B -
  NEH83_RS18165 (NEH83_18190) - 4119443..4120120 (-) 678 WP_230543452.1 DUF721 domain-containing protein -
  NEH83_RS18170 (NEH83_18195) recF 4120117..4121247 (-) 1131 WP_030077232.1 DNA replication/repair protein RecF Machinery gene
  NEH83_RS18175 (NEH83_18200) gnd 4121321..4122199 (-) 879 WP_030077234.1 phosphogluconate dehydrogenase (NAD(+)-dependent, decarboxylating) -
  NEH83_RS18180 (NEH83_18205) dnaN 4122360..4123490 (-) 1131 WP_003967886.1 DNA polymerase III subunit beta -

Sequence

Protein


Download         Length: 376 a.a.        Molecular weight: 40953.68 Da        Isoelectric Point: 6.8623

>NTDB_id=601071 NEH83_RS18170 WP_030077232.1 4120117..4121247(-) (recF) [Streptomyces sp. JUS-F4]
MHVTHLSLADFRSYARVEVPLDPGVTAFVGPNGQGKTNLVEAVGYLATLGSHRVSSDAPLVRMGAERAVIRAAVTQGERS
QLIELELNPGRANRARINRSSQVRPRDVLGIVRTVLFAPEDLALVKGDPGERRRFLDELITARSPRMAGVRSDYERVLKQ
RNTLLKSAAMARRHGGRSMDMSTLDVWDQHLARVGAELLAQRLDLIATLQPLADKAYGDVAPGGGPVALEYRSSVGEDVG
PERTRDELYEQLIAALVGVRKQEIERGVTLVGPHRDDLLLGLRGMPAKGYASHGESWSYALALRLASYELLRSEGNEPVL
VLDDVFAELDARRRERLAELVAPGEQVLVTAAVAEDVPGVLAGTRYAVTAGEVERV

Nucleotide


Download         Length: 1131 bp        

>NTDB_id=601071 NEH83_RS18170 WP_030077232.1 4120117..4121247(-) (recF) [Streptomyces sp. JUS-F4]
ATGCATGTCACCCATCTCTCGCTGGCCGACTTCCGCTCGTACGCCCGGGTCGAGGTCCCTCTCGACCCGGGCGTCACCGC
GTTCGTGGGGCCCAACGGGCAGGGCAAGACCAATCTCGTCGAGGCCGTCGGCTATCTCGCCACCCTCGGCAGCCACCGGG
TCTCCTCGGACGCCCCGCTGGTGCGGATGGGCGCGGAGCGGGCGGTGATCCGCGCGGCGGTGACCCAGGGCGAGCGCTCC
CAGCTGATCGAGCTGGAGCTGAACCCGGGCCGCGCCAACCGGGCCCGGATCAACCGGTCCTCGCAGGTCAGACCGCGTGA
TGTGCTCGGCATCGTACGGACGGTGCTGTTCGCGCCGGAGGATCTGGCGCTGGTCAAGGGCGATCCGGGCGAGCGGCGGC
GGTTCCTGGACGAGCTGATCACCGCGCGGTCGCCCCGGATGGCCGGGGTCCGCTCCGACTACGAGCGGGTGCTCAAGCAG
CGCAACACCCTGCTGAAGTCGGCGGCGATGGCCCGTCGGCACGGCGGCCGCTCGATGGACATGTCCACGCTCGACGTCTG
GGACCAGCACCTGGCCCGGGTGGGCGCCGAGCTGCTCGCGCAGCGGCTCGACCTGATCGCCACGCTCCAGCCGCTGGCCG
ACAAGGCGTACGGGGACGTCGCGCCGGGCGGCGGGCCGGTGGCGCTGGAGTACCGCAGCTCGGTCGGCGAGGACGTGGGT
CCCGAGCGCACCCGCGACGAGCTGTACGAGCAGCTGATCGCGGCACTGGTGGGGGTCCGCAAGCAGGAGATCGAGCGGGG
TGTGACGCTGGTCGGTCCGCACCGTGACGATCTGCTGCTCGGGCTGCGGGGGATGCCGGCGAAGGGGTACGCGAGTCACG
GCGAGTCCTGGAGTTACGCGCTGGCGCTGCGTCTTGCCAGTTACGAGCTGCTGCGCTCCGAGGGCAACGAGCCGGTGCTG
GTCCTGGACGACGTCTTCGCCGAGCTGGACGCCCGCCGCCGGGAGCGGCTGGCGGAGCTGGTGGCCCCGGGTGAGCAGGT
GCTCGTGACGGCGGCGGTGGCGGAGGACGTTCCGGGCGTGCTGGCGGGGACGCGGTACGCGGTGACGGCGGGCGAGGTGG
AGCGCGTATGA

Domains

Predicted by InterProScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(3-351)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recF Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

38.082

97.074

0.37