Detailed information    

insolico Bioinformatically predicted

Overview

Name   recP/tkt   Type   Machinery gene
Locus tag   NEH83_RS11080 Genome accession   NZ_CP098783
Coordinates   2512332..2514617 (-) Length   761 a.a.
NCBI ID   WP_302212888.1    Uniprot ID   -
Organism   Streptomyces sp. JUS-F4     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2507332..2519617
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NEH83_RS11065 (NEH83_11070) - 2508668..2509747 (+) 1080 WP_302212886.1 glycerophosphodiester phosphodiesterase family protein -
  NEH83_RS11070 (NEH83_11075) - 2509793..2510593 (-) 801 WP_302212887.1 helix-turn-helix domain-containing protein -
  NEH83_RS11075 (NEH83_11080) - 2510751..2512219 (+) 1469 Protein_2196 MFS transporter -
  NEH83_RS11080 (NEH83_11085) recP/tkt 2512332..2514617 (-) 2286 WP_302212888.1 transketolase Machinery gene
  NEH83_RS11085 (NEH83_11090) - 2514809..2515450 (+) 642 WP_006124434.1 superoxide dismutase -
  NEH83_RS37110 - 2515568..2515780 (+) 213 Protein_2199 ArsR family transcriptional regulator -
  NEH83_RS11090 (NEH83_11095) - 2516232..2516900 (+) 669 WP_302216946.1 CatB-related O-acetyltransferase -
  NEH83_RS11095 (NEH83_11100) - 2516931..2517452 (+) 522 WP_030625940.1 hypothetical protein -
  NEH83_RS11100 (NEH83_11105) - 2517465..2518082 (-) 618 WP_302212890.1 hypothetical protein -
  NEH83_RS11105 (NEH83_11115) - 2518341..2519243 (+) 903 WP_302216947.1 GNAT family N-acetyltransferase -

Sequence

Protein


Download         Length: 761 a.a.        Molecular weight: 80956.53 Da        Isoelectric Point: 4.9818

>NTDB_id=601055 NEH83_RS11080 WP_302212888.1 2512332..2514617(-) (recP/tkt) [Streptomyces sp. JUS-F4]
MAPTEAPNGPNGPNGPNGPNGPTDAGGGRAARGRDPRLAPPLAHAAGWGPLDVRAVDTVRALAADAVQKAGHGHPGTAMS
LAPLAYLLFQQVMRHDPADDRWLGRDRFVLSCGHSSLTLYIQLYLSGYGMELDDLKALRTWGSSTPGHPEYRHTRGVEIT
TGPLGQGLASAVGMAMAARRERGLLDPDAPAGTSPFDHHVYVVASDGDLMEGVTSEASSLAGHQELGNLVVFYDSNHISI
EDDTDISFSEDVAARYAAYDWHVQTVDFTRTGDYVEDVDALLAAVEAAKSEHGRPSLIVLRTIIGWPAPTKQNTGKAHGS
ALGDDEVAATKKLLGFDPDADFTVEDDVLEHARAVVERGAAAHRAWEPRYQVWRAAHPERAALLDRLLEQKLPEGWADSL
PVFDADPKGIATRKASGDVLTALAPVLPELWGGSADLAGSNNTTMEGEPSFVPERKQTGEFPGAPYGRTLHFGIREHAMG
AILNGIALQSLTRPYGGTFLIFSDYMRPAVRLAALMKLPVTYVWTHDSIGLGEDGPTHQPVEQLAALRAIPGLDVVRPAD
ANETSVCWRTVLEHHDRPAGLALTRQPLPVLRRGGSDGAYASAEGAVRGGYVLADSRGETPDVILVATGSEVHIALEARE
LLAAEGSDARVVSMPCREWFAEQPYAYQDEVLPPAVRARVSVEAAVAQGWRDVVGDAGRMVSLEHFGASAAYERLYEEFG
ITPRAVAEAARDSIRAAAGPVRPGGERPGAAPSEGGTGDVG

Nucleotide


Download         Length: 2286 bp        

>NTDB_id=601055 NEH83_RS11080 WP_302212888.1 2512332..2514617(-) (recP/tkt) [Streptomyces sp. JUS-F4]
ATGGCACCCACCGAAGCGCCGAACGGCCCGAACGGCCCGAACGGCCCGAACGGCCCGAACGGCCCGACCGATGCCGGAGG
CGGTCGCGCTGCCCGTGGCCGCGATCCGCGACTCGCCCCGCCCCTCGCGCACGCGGCCGGCTGGGGGCCGCTCGACGTCC
GCGCCGTCGACACCGTGCGGGCGCTCGCGGCCGACGCCGTGCAGAAGGCGGGCCACGGCCACCCGGGCACCGCGATGAGC
CTGGCCCCGCTGGCGTACCTGCTGTTCCAGCAGGTGATGCGGCACGACCCGGCCGACGACCGGTGGCTCGGCCGCGACCG
CTTCGTGCTCTCCTGCGGCCACTCCAGCCTCACCCTCTACATCCAGCTCTATCTGAGCGGGTACGGGATGGAGCTGGACG
ACCTGAAGGCGCTGCGCACCTGGGGCTCCAGCACCCCCGGCCACCCGGAGTACCGCCACACCCGGGGCGTCGAGATCACC
ACCGGGCCGCTCGGGCAGGGGCTCGCCTCCGCCGTCGGCATGGCCATGGCCGCCCGGCGCGAGCGCGGCCTCCTCGACCC
CGACGCGCCCGCCGGCACCAGCCCCTTCGACCACCATGTGTACGTCGTCGCCTCCGACGGCGACCTGATGGAAGGCGTGA
CGTCCGAGGCCAGTTCGCTGGCGGGGCATCAGGAGCTCGGGAACCTGGTCGTCTTCTACGACTCCAACCACATCTCCATC
GAGGACGACACCGACATCTCCTTCAGCGAGGACGTCGCCGCCCGCTACGCCGCGTACGACTGGCACGTCCAGACGGTCGA
CTTCACCCGGACCGGCGACTACGTCGAGGACGTCGACGCCCTGCTCGCCGCCGTCGAGGCCGCGAAGAGCGAGCACGGCC
GGCCCTCCCTGATCGTCCTGCGCACGATCATCGGCTGGCCCGCGCCCACCAAGCAGAACACCGGCAAGGCCCACGGCTCC
GCGCTCGGCGACGACGAGGTCGCCGCCACCAAGAAGCTGCTCGGCTTCGACCCGGACGCCGACTTCACCGTCGAGGACGA
CGTACTGGAGCACGCCCGCGCGGTCGTCGAGCGCGGGGCCGCGGCCCACCGCGCCTGGGAGCCCCGCTATCAGGTGTGGC
GCGCCGCCCACCCCGAACGCGCCGCACTCCTCGACCGGCTGCTGGAGCAGAAGCTGCCGGAGGGCTGGGCGGACAGCCTG
CCCGTCTTCGACGCCGACCCCAAGGGCATCGCCACCCGCAAGGCCTCCGGCGATGTGCTCACCGCGCTGGCCCCCGTGCT
GCCCGAACTGTGGGGCGGCTCGGCCGACCTCGCGGGGAGCAACAACACCACCATGGAGGGCGAACCGTCCTTCGTGCCGG
AGCGGAAGCAGACGGGCGAGTTCCCCGGCGCCCCGTACGGCCGCACGCTCCACTTCGGCATCCGCGAGCACGCCATGGGC
GCGATCCTCAACGGCATCGCGCTCCAGAGCCTCACCCGGCCCTACGGCGGTACGTTCCTGATCTTCAGCGACTACATGCG
CCCGGCCGTCCGCCTCGCCGCCCTGATGAAGCTGCCGGTCACCTACGTCTGGACCCATGACTCCATCGGCCTGGGCGAGG
ACGGCCCCACCCACCAGCCCGTCGAGCAACTGGCCGCGCTCCGAGCGATTCCCGGACTCGACGTCGTACGGCCCGCCGAC
GCGAACGAGACCTCCGTCTGCTGGCGCACCGTCCTGGAACACCACGACCGGCCCGCCGGCCTCGCCCTGACCCGGCAGCC
GCTGCCCGTGCTCAGGCGCGGCGGGAGCGACGGCGCGTACGCCTCCGCCGAAGGGGCCGTCCGGGGCGGCTACGTCCTCG
CCGACAGTCGCGGCGAGACGCCCGACGTCATCCTCGTCGCGACCGGATCGGAGGTCCACATCGCTCTGGAGGCACGGGAG
TTGCTTGCCGCCGAAGGAAGCGACGCGCGGGTGGTCTCCATGCCCTGCCGCGAGTGGTTCGCCGAGCAGCCGTACGCCTA
CCAGGACGAGGTCCTGCCGCCCGCCGTCCGGGCCCGGGTGAGCGTCGAGGCGGCCGTCGCCCAGGGCTGGCGGGACGTGG
TGGGGGACGCGGGGCGGATGGTCAGCCTGGAGCACTTCGGCGCGTCCGCCGCCTACGAGCGCCTGTACGAGGAGTTCGGC
ATCACGCCGCGGGCGGTCGCCGAGGCCGCCCGGGACAGCATCCGCGCGGCGGCCGGCCCCGTCCGGCCCGGCGGGGAACG
GCCCGGCGCGGCACCGTCCGAGGGCGGCACCGGGGACGTGGGCTAG

Domains

Predicted by InterProScan.

Transketolase, thiamine diphosphate binding domain (Transketolase_N)

(53-393)

Transketolase, pyrimidine binding domain (Transket_pyr)

(409-589)

Transketolase, C-terminal domain (Transketolase_C)

(618-726)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recP/tkt Streptococcus pneumoniae TIGR4

42.982

89.882

0.386