Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Regulator
Locus tag   BAJP3144_RS15905 Genome accession   NZ_CP082283
Coordinates   3205459..3206103 (-) Length   214 a.a.
NCBI ID   WP_014418762.1    Uniprot ID   A0A2Z4EIP2
Organism   Bacillus amyloliquefaciens strain JP3144     
Function   promoting transcription of comS (predicted from homology)   
Competence regulation

Genomic Context

Location: 3200459..3211103
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BAJP3144_RS15870 (BAJP3144_15870) - 3201644..3202075 (+) 432 WP_007613424.1 Na(+)/H(+) antiporter subunit B -
  BAJP3144_RS15875 (BAJP3144_15875) - 3202075..3202416 (+) 342 WP_003152063.1 Na(+)/H(+) antiporter subunit C -
  BAJP3144_RS15880 (BAJP3144_15880) - 3202409..3203890 (+) 1482 WP_021495363.1 Na+/H+ antiporter subunit D -
  BAJP3144_RS15885 (BAJP3144_15885) - 3203896..3204372 (+) 477 WP_154817911.1 Na+/H+ antiporter subunit E -
  BAJP3144_RS15890 (BAJP3144_15890) - 3204372..3204656 (+) 285 WP_012118311.1 Na(+)/H(+) antiporter subunit F1 -
  BAJP3144_RS15895 (BAJP3144_15895) mnhG 3204640..3205014 (+) 375 WP_003152056.1 monovalent cation/H(+) antiporter subunit G -
  BAJP3144_RS15900 (BAJP3144_15900) - 3205054..3205437 (-) 384 WP_017419422.1 hotdog fold thioesterase -
  BAJP3144_RS15905 (BAJP3144_15905) comA 3205459..3206103 (-) 645 WP_014418762.1 response regulator transcription factor Regulator
  BAJP3144_RS15910 (BAJP3144_15910) comP 3206184..3208490 (-) 2307 WP_222893417.1 sensor histidine kinase Regulator
  BAJP3144_RS15915 (BAJP3144_15915) comX 3208509..3208685 (-) 177 WP_017419424.1 competence pheromone ComX -
  BAJP3144_RS15920 (BAJP3144_15920) - 3208700..3209575 (-) 876 WP_110124799.1 polyprenyl synthetase family protein -
  BAJP3144_RS15925 (BAJP3144_15925) degQ 3209727..3209867 (-) 141 WP_003152043.1 degradation enzyme regulation protein DegQ Regulator
  BAJP3144_RS15930 (BAJP3144_15930) - 3210332..3210673 (+) 342 WP_021495366.1 hypothetical protein -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 24302.70 Da        Isoelectric Point: 4.9953

>NTDB_id=601055 BAJP3144_RS15905 WP_014418762.1 3205459..3206103(-) (comA) [Bacillus amyloliquefaciens strain JP3144]
MKKILVIDDHPAVMEGTKTILETDTNLSVDCLSPDASEQFVLRHDFSAYDLILMDLNLGDDISGIELSKKILKENPLCKI
IVYTGYEVEDYFEESIRAGLHGAISKTESKEKIMQYIYHVLNGQILVDFSYFKQLMTQQKTKTSSSPQSEQDRLTQRERH
ILQEVEKGLTNQEIADALHLSKRSIEYSLTSIFNKLNVGSRTEAVLIAKSDNVL

Nucleotide


Download         Length: 645 bp        

>NTDB_id=601055 BAJP3144_RS15905 WP_014418762.1 3205459..3206103(-) (comA) [Bacillus amyloliquefaciens strain JP3144]
ATGAAAAAGATACTAGTGATTGATGATCATCCGGCTGTCATGGAGGGCACCAAGACGATTCTGGAAACGGACACGAATCT
TTCTGTCGATTGCCTCAGTCCTGATGCCAGTGAACAATTCGTTCTCCGGCATGATTTTTCAGCTTACGATCTCATATTAA
TGGATTTAAATCTGGGTGATGACATCAGCGGCATAGAGCTTTCCAAGAAAATCTTAAAAGAGAATCCTCTCTGTAAAATC
ATTGTCTACACAGGCTATGAGGTTGAAGATTATTTTGAAGAATCCATCCGCGCGGGCCTGCATGGCGCCATCAGTAAAAC
TGAATCTAAAGAGAAAATCATGCAATACATATATCACGTGCTCAACGGACAGATTTTAGTTGATTTCTCCTATTTCAAAC
AGCTGATGACCCAGCAAAAAACAAAAACGTCTTCTTCCCCTCAAAGTGAGCAGGATCGGTTAACACAGAGAGAGCGCCAT
ATTCTCCAAGAGGTCGAAAAAGGTTTGACCAATCAGGAAATCGCAGATGCGCTTCACTTAAGCAAGCGGTCGATTGAATA
CAGCCTGACATCCATTTTTAATAAGCTGAATGTCGGCTCCCGCACTGAAGCGGTGCTGATCGCCAAGTCAGATAACGTAC
TATAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(4-117)

Bacterial regulatory proteins, luxR family (GerE)

(153-208)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2Z4EIP2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Bacillus subtilis subsp. subtilis str. 168

85.981

100

0.86