Detailed information    

insolico Bioinformatically predicted

Overview

Name   recP/tkt   Type   Machinery gene
Locus tag   NEH83_RS07235 Genome accession   NZ_CP098783
Coordinates   1663705..1665792 (+) Length   695 a.a.
NCBI ID   WP_302212602.1    Uniprot ID   -
Organism   Streptomyces sp. JUS-F4     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1658705..1670792
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NEH83_RS07210 (NEH83_07215) - 1658867..1659634 (+) 768 WP_302212600.1 ABC transporter permease -
  NEH83_RS07215 (NEH83_07220) - 1659713..1660699 (+) 987 WP_086778555.1 heme A synthase -
  NEH83_RS07220 (NEH83_07225) - 1660765..1661904 (-) 1140 Protein_1435 amidohydrolase family protein -
  NEH83_RS07225 (NEH83_07230) - 1661984..1662361 (-) 378 WP_030078757.1 hypothetical protein -
  NEH83_RS07230 (NEH83_07235) - 1662465..1663418 (-) 954 WP_302212601.1 heme o synthase -
  NEH83_RS07235 (NEH83_07240) recP/tkt 1663705..1665792 (+) 2088 WP_302212602.1 transketolase Machinery gene
  NEH83_RS07240 (NEH83_07245) tal 1665827..1666945 (+) 1119 WP_302212603.1 transaldolase -
  NEH83_RS07245 (NEH83_07250) zwf 1666951..1668483 (+) 1533 WP_030078764.1 glucose-6-phosphate dehydrogenase -
  NEH83_RS07250 (NEH83_07255) opcA 1668480..1669520 (+) 1041 WP_030078765.1 glucose-6-phosphate dehydrogenase assembly protein OpcA -
  NEH83_RS07255 (NEH83_07260) pgl 1669517..1670299 (+) 783 WP_030078767.1 6-phosphogluconolactonase -
  NEH83_RS07260 (NEH83_07265) - 1670370..1670732 (+) 363 WP_030627494.1 VOC family protein -

Sequence

Protein


Download         Length: 695 a.a.        Molecular weight: 74664.51 Da        Isoelectric Point: 4.9964

>NTDB_id=601044 NEH83_RS07235 WP_302212602.1 1663705..1665792(+) (recP/tkt) [Streptomyces sp. JUS-F4]
MSIKPTTTDLQWTDVDQRAVDTARVLAADAVQKVGNGHPGTAMSLAPAAYTLFQKVMRHDPADAEWTGRDRFVLSAGHSS
LTLYIQLYLAGYGLELDDLKAFRTWGSKTPGHPEYGHTTGVETTTGPLGQGVANAVGMAMAARYERGLFDPEAAPGTSPF
DHTVWVVAGDGCLQEGISAEASSLAGHQKLGNLVLLWDDNHISIEGDTETAVSEDTIKRYEAYGWHVQRVDQLPSGDLDP
AGLYAALQAAKAETERPSFIAARSIIAWPAPNAQNTEAAHGSALGDDEIAATKRVLGFDPEQTFEVSDEVIGHTRQALDR
GREARAEWDKSFAAWRTANPERAASFDRIAAGELPEGWEEKLPVFEPGKGLATRAASGKVLQALGEIVPELWGGSADLAG
SNNTTIDKTSSFLPAGNPLPEADPYGRTIHFGIREHAMAAAMNGIALHGNTRIYGGTFLVFSDYMRNAVRLSALMHLPVT
YVWTHDSIGLGEDGPTHQPVEHLAALRAIPGLNIVRPADANETAIAWREILRRYTKVFGKGAPHGLALTRQGVPTYEANE
NAAKGGYVLFEADGGEPQVLLIATGSEVHVAVEAREQLQAAGVPTRVVSMPSVEWFEEQDQAYKDSVLPPSVKARVAVEA
GIGLTWYRYVGDAGRIVSLEHFGASADAKVLFREFGFTPEHVAAAARESLEAAAR

Nucleotide


Download         Length: 2088 bp        

>NTDB_id=601044 NEH83_RS07235 WP_302212602.1 1663705..1665792(+) (recP/tkt) [Streptomyces sp. JUS-F4]
GTGAGCATCAAGCCGACCACCACAGACCTCCAGTGGACCGATGTGGACCAGCGGGCCGTGGACACCGCCCGTGTTCTCGC
CGCGGACGCCGTACAGAAAGTCGGAAACGGCCACCCGGGCACGGCCATGAGCCTCGCGCCTGCCGCGTACACCCTCTTCC
AGAAGGTGATGCGGCACGACCCCGCGGACGCCGAGTGGACCGGCCGCGACCGGTTCGTCCTCTCCGCCGGCCACTCCAGT
CTGACCCTCTACATCCAGCTCTACCTCGCCGGATACGGCCTGGAGCTGGACGACCTCAAGGCTTTCCGCACCTGGGGCTC
GAAGACCCCGGGCCACCCGGAGTACGGCCACACCACCGGCGTCGAGACGACCACCGGTCCGCTGGGCCAGGGTGTCGCCA
ACGCGGTGGGCATGGCGATGGCCGCCCGCTACGAGCGCGGCCTGTTCGACCCCGAGGCGGCCCCCGGCACCTCCCCGTTC
GACCACACGGTGTGGGTCGTCGCGGGTGACGGCTGCCTCCAGGAGGGCATCTCGGCCGAGGCGTCCTCGCTGGCCGGGCA
CCAGAAGCTGGGCAACCTGGTCCTGCTCTGGGACGACAACCACATCTCGATCGAGGGCGACACGGAGACCGCGGTCTCCG
AGGACACCATCAAGCGGTACGAGGCGTACGGCTGGCACGTCCAGCGGGTCGACCAGCTGCCCAGCGGCGACCTGGACCCG
GCGGGTCTGTACGCGGCGCTCCAGGCGGCCAAGGCCGAGACCGAGCGCCCCTCGTTCATCGCGGCCCGCTCGATCATCGC
CTGGCCCGCCCCGAACGCCCAGAACACCGAGGCCGCGCACGGCTCGGCGCTCGGCGACGACGAGATCGCGGCGACCAAGC
GGGTCCTCGGCTTCGACCCGGAGCAGACCTTCGAGGTCTCCGACGAGGTCATCGGCCACACCCGCCAGGCCCTGGACCGC
GGCCGCGAGGCCCGCGCCGAGTGGGACAAGTCGTTCGCCGCCTGGCGCACGGCCAACCCGGAGCGCGCCGCCTCCTTCGA
CCGGATCGCCGCGGGCGAGCTGCCCGAGGGCTGGGAGGAGAAGCTCCCGGTCTTCGAGCCCGGCAAGGGCCTGGCCACCC
GTGCCGCGTCCGGCAAGGTGCTCCAGGCGCTCGGCGAGATCGTGCCCGAGCTGTGGGGCGGCTCCGCCGACCTCGCGGGC
TCGAACAACACGACGATCGACAAGACGTCGTCGTTCCTCCCGGCGGGCAACCCGCTGCCGGAGGCCGACCCGTACGGCCG
GACGATCCACTTCGGCATCCGCGAGCACGCCATGGCCGCCGCCATGAACGGCATCGCGCTGCACGGCAACACCCGCATCT
ACGGCGGCACCTTCCTGGTGTTCTCCGACTACATGCGCAACGCGGTGCGGCTCTCCGCGCTGATGCACCTGCCGGTGACG
TACGTGTGGACGCACGACTCGATCGGCCTCGGCGAGGACGGTCCGACCCACCAGCCGGTCGAGCACCTGGCCGCGCTGCG
CGCCATCCCGGGCCTGAACATCGTGCGCCCGGCCGACGCCAACGAGACCGCCATCGCCTGGCGCGAGATCCTGCGCCGCT
ACACCAAGGTGTTCGGCAAGGGCGCCCCGCACGGTCTGGCGCTGACCCGCCAGGGCGTGCCGACGTACGAGGCGAACGAG
AACGCGGCCAAGGGCGGTTACGTCCTCTTCGAGGCCGACGGTGGCGAGCCGCAGGTGCTGCTCATCGCGACCGGTTCCGA
GGTCCATGTCGCCGTCGAGGCGCGCGAGCAGCTCCAGGCGGCCGGTGTGCCGACCCGGGTGGTCTCGATGCCGTCGGTCG
AGTGGTTCGAGGAGCAGGACCAGGCGTACAAGGACAGCGTGCTGCCGCCGTCGGTCAAGGCGCGCGTCGCCGTCGAGGCG
GGCATCGGCCTGACCTGGTACCGGTACGTGGGCGACGCGGGCCGGATCGTCTCGCTGGAGCACTTCGGTGCCTCGGCCGA
CGCGAAGGTGCTGTTCCGCGAGTTCGGCTTCACGCCCGAGCACGTGGCCGCCGCCGCGCGGGAATCTCTCGAAGCCGCCG
CGCGCTGA

Domains

Predicted by InterProScan.

Transketolase, thiamine diphosphate binding domain (Transketolase_N)

(16-355)

Transketolase, pyrimidine binding domain (Transket_pyr)

(370-533)

Transketolase, C-terminal domain (Transketolase_C)

(576-682)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recP/tkt Streptococcus pneumoniae TIGR4

44.444

97.122

0.432