Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   BAJP3144_RS11295 Genome accession   NZ_CP082283
Coordinates   2305607..2306215 (+) Length   202 a.a.
NCBI ID   WP_222893634.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain JP3144     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2300607..2311215
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BAJP3144_RS11255 (BAJP3144_11255) - 2301627..2302133 (-) 507 WP_012117833.1 PTS glucose transporter subunit IIA -
  BAJP3144_RS11260 (BAJP3144_11260) - 2302272..2302685 (+) 414 WP_017418017.1 Hsp20/alpha crystallin family protein -
  BAJP3144_RS11265 (BAJP3144_11265) - 2302715..2303182 (-) 468 WP_105937586.1 YppG family protein -
  BAJP3144_RS11270 (BAJP3144_11270) - 2303369..2303551 (+) 183 WP_003153532.1 YppF family protein -
  BAJP3144_RS11275 (BAJP3144_11275) - 2303590..2303958 (-) 369 WP_072177164.1 YppE family protein -
  BAJP3144_RS11280 (BAJP3144_11280) - 2304004..2304249 (-) 246 WP_014418233.1 DUF5446 family protein -
  BAJP3144_RS11285 (BAJP3144_11285) sspM 2304455..2304559 (+) 105 WP_003153525.1 acid-soluble spore protein SspM -
  BAJP3144_RS11290 (BAJP3144_11290) - 2304603..2305565 (-) 963 WP_022553046.1 DUF2515 domain-containing protein -
  BAJP3144_RS11295 (BAJP3144_11295) recU 2305607..2306215 (+) 609 WP_222893634.1 Holliday junction resolvase RecU Machinery gene
  BAJP3144_RS11300 (BAJP3144_11300) - 2306254..2309037 (+) 2784 WP_022553045.1 PBP1A family penicillin-binding protein -
  BAJP3144_RS11305 (BAJP3144_11305) - 2309115..2309606 (-) 492 WP_022553044.1 YpoC family protein -
  BAJP3144_RS11310 (BAJP3144_11310) nth 2309603..2310262 (-) 660 WP_022553043.1 endonuclease III -
  BAJP3144_RS11315 (BAJP3144_11315) dnaD 2310281..2310979 (-) 699 WP_003153516.1 DNA replication protein DnaD -

Sequence

Protein


Download         Length: 202 a.a.        Molecular weight: 23606.66 Da        Isoelectric Point: 9.5778

>NTDB_id=601032 BAJP3144_RS11295 WP_222893634.1 2305607..2306215(+) (recU) [Bacillus amyloliquefaciens strain JP3144]
MIRYPNGKTSQPNKTVSSQNSQKRTHSYSNRGMTLEDDLNETNKYYLANQIAVIHKKPTPVQIVNVHYPKRSAAVIKEAY
FKQSSTTDYNGIYKGRYIDFEAKETKNKTAFPLQNFHDHQIEHMKQVVRQDGICFVIISAFGKVYFLEADKLFVFWDRKE
NNGRKSIRKDELEDASFPISLGYSPRIDYISIIEQLYFSQEQ

Nucleotide


Download         Length: 609 bp        

>NTDB_id=601032 BAJP3144_RS11295 WP_222893634.1 2305607..2306215(+) (recU) [Bacillus amyloliquefaciens strain JP3144]
GTGATTCGGTACCCGAATGGAAAAACTTCTCAGCCGAACAAAACGGTTTCATCCCAAAACAGCCAGAAACGGACCCATTC
ATACAGTAATCGCGGCATGACCCTCGAAGACGACCTGAATGAAACGAATAAGTATTATCTGGCTAACCAAATTGCTGTCA
TTCACAAAAAGCCGACACCCGTCCAGATTGTAAACGTCCACTATCCGAAAAGAAGCGCCGCAGTCATTAAGGAAGCTTAT
TTTAAACAGTCTTCAACAACTGACTACAACGGCATTTATAAAGGACGCTACATTGATTTTGAGGCAAAAGAAACAAAAAA
CAAAACGGCATTTCCCCTGCAGAATTTTCATGATCATCAGATTGAACATATGAAGCAGGTGGTCAGGCAAGACGGCATTT
GTTTTGTTATTATATCCGCTTTCGGAAAGGTTTATTTCCTCGAAGCCGACAAGCTGTTTGTCTTTTGGGACAGAAAGGAG
AACAATGGCAGAAAATCGATTCGCAAAGACGAATTAGAAGATGCTTCCTTTCCGATTTCCCTTGGATACTCACCGAGAAT
TGATTATATTAGTATTATTGAACAGCTTTATTTTTCGCAGGAACAGTAG

Domains

Predicted by InterproScan.

Recombination protein U (RecU)

(31-193)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

90.452

98.515

0.891