Detailed information    

insolico Bioinformatically predicted

Overview

Name   nucA/comI   Type   Machinery gene
Locus tag   BAJP3144_RS08715 Genome accession   NZ_CP082283
Coordinates   1802448..1802882 (+) Length   144 a.a.
NCBI ID   WP_007611576.1    Uniprot ID   A0A172XIP3
Organism   Bacillus amyloliquefaciens strain JP3144     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1797448..1807882
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BAJP3144_RS08710 (BAJP3144_08710) - 1800948..1802159 (-) 1212 WP_160216861.1 cytochrome P450 -
  BAJP3144_RS08715 (BAJP3144_08715) nucA/comI 1802448..1802882 (+) 435 WP_007611576.1 NucA/NucB deoxyribonuclease domain-containing protein Machinery gene
  BAJP3144_RS08720 (BAJP3144_08720) - 1802942..1803697 (+) 756 WP_191389757.1 YoaK family protein -
  BAJP3144_RS08725 (BAJP3144_08725) - 1803731..1804093 (-) 363 WP_007410383.1 hypothetical protein -
  BAJP3144_RS08730 (BAJP3144_08730) - 1804285..1805613 (-) 1329 WP_014417826.1 S8 family peptidase -
  BAJP3144_RS08735 (BAJP3144_08735) - 1805792..1806025 (+) 234 WP_021493648.1 hypothetical protein -
  BAJP3144_RS08740 (BAJP3144_08740) - 1806281..1806988 (+) 708 WP_014417828.1 poly-gamma-glutamate hydrolase family protein -
  BAJP3144_RS08745 (BAJP3144_08745) - 1807048..1807500 (+) 453 WP_014305039.1 OsmC family protein -
  BAJP3144_RS08750 (BAJP3144_08750) - 1807514..1807867 (-) 354 WP_029973435.1 multidrug efflux SMR transporter -

Sequence

Protein


Download         Length: 144 a.a.        Molecular weight: 15528.47 Da        Isoelectric Point: 7.2418

>NTDB_id=601031 BAJP3144_RS08715 WP_007611576.1 1802448..1802882(+) (nucA/comI) [Bacillus amyloliquefaciens strain JP3144]
MNAFMKWAASLLLVISLQFGLTGAGIHSDSAARAASRYDQVLYFPLSKYPETGNHIKDAISAGHSEICTIDRGGAENRRK
ESLKGIPTKPGFDRDEWPMAVCTEGGAGADIRYVTPSDNRGAGSWVGNQMSGYSDGTRVLFIVQ

Nucleotide


Download         Length: 435 bp        

>NTDB_id=601031 BAJP3144_RS08715 WP_007611576.1 1802448..1802882(+) (nucA/comI) [Bacillus amyloliquefaciens strain JP3144]
ATGAATGCGTTTATGAAATGGGCGGCAAGTCTGCTTTTGGTGATCTCTCTTCAGTTCGGCCTTACGGGCGCCGGCATCCA
TTCGGACAGTGCTGCTCGTGCCGCATCCCGATACGATCAGGTGCTGTATTTCCCGCTGTCAAAATATCCGGAGACGGGAA
ATCATATAAAAGACGCCATTTCGGCAGGTCATTCTGAGATTTGTACAATTGATCGGGGCGGAGCGGAGAATAGAAGGAAA
GAATCATTGAAAGGAATTCCGACAAAGCCCGGGTTTGACCGTGATGAATGGCCCATGGCAGTCTGCACAGAAGGCGGGGC
GGGGGCTGATATCAGATATGTAACCCCGTCGGATAACCGCGGGGCCGGTTCATGGGTTGGAAATCAAATGAGCGGATACT
CCGACGGCACGAGAGTACTATTTATCGTTCAGTAG

Domains

Predicted by InterproScan.

Deoxyribonuclease NucA/NucB (DNase_NucA_NucB)

(49-138)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A172XIP3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nucA/comI Bacillus subtilis subsp. subtilis str. 168

56.452

86.111

0.486