Detailed information    

insolico Bioinformatically predicted

Overview

Name   nin/comJ   Type   Regulator
Locus tag   BAJP3144_RS01740 Genome accession   NZ_CP082283
Coordinates   328771..329169 (-) Length   132 a.a.
NCBI ID   WP_007609299.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain JP3144     
Function   represses the expression of nucA (predicted from homology)   
Competence regulation

Genomic Context

Location: 323771..334169
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BAJP3144_RS01715 (BAJP3144_01715) - 323943..325145 (+) 1203 WP_014416870.1 GTP-binding protein -
  BAJP3144_RS01720 (BAJP3144_01720) - 325210..326346 (+) 1137 WP_052827030.1 zinc-dependent alcohol dehydrogenase -
  BAJP3144_RS01725 (BAJP3144_01725) - 326361..326795 (+) 435 WP_014416871.1 RDD family protein -
  BAJP3144_RS01730 (BAJP3144_01730) - 326912..327190 (+) 279 WP_263612330.1 YckD family protein -
  BAJP3144_RS01735 (BAJP3144_01735) - 327294..328730 (+) 1437 WP_014416872.1 glycoside hydrolase family 1 protein -
  BAJP3144_RS01740 (BAJP3144_01740) nin/comJ 328771..329169 (-) 399 WP_007609299.1 competence protein ComJ Regulator
  BAJP3144_RS01745 (BAJP3144_01745) nucA/comI 329190..329627 (-) 438 WP_003156588.1 NucA/NucB deoxyribonuclease domain-containing protein Machinery gene
  BAJP3144_RS01750 (BAJP3144_01750) hxlB 329958..330515 (-) 558 WP_021494205.1 6-phospho-3-hexuloisomerase -
  BAJP3144_RS01755 (BAJP3144_01755) hxlA 330512..331147 (-) 636 WP_014416875.1 3-hexulose-6-phosphate synthase -
  BAJP3144_RS01760 (BAJP3144_01760) - 331379..331741 (+) 363 WP_007409352.1 helix-turn-helix domain-containing protein -

Sequence

Protein


Download         Length: 132 a.a.        Molecular weight: 14977.03 Da        Isoelectric Point: 4.9712

>NTDB_id=601002 BAJP3144_RS01740 WP_007609299.1 328771..329169(-) (nin/comJ) [Bacillus amyloliquefaciens strain JP3144]
MIKSWKPQELAISYHQFTIFQKDSEPPVIDWTDEAIEKGYAEADGAVSFEARRNTRAFIVLRLNTSEPVPSYEKKATVPF
EAVKDGIEIESVMSKRLFFHIPKGRYSLTCYSVPAEISDLHADTYIIDAAAM

Nucleotide


Download         Length: 399 bp        

>NTDB_id=601002 BAJP3144_RS01740 WP_007609299.1 328771..329169(-) (nin/comJ) [Bacillus amyloliquefaciens strain JP3144]
TTGATTAAATCATGGAAACCGCAAGAACTGGCCATTTCTTATCATCAATTTACAATCTTCCAAAAAGATTCAGAACCGCC
TGTTATCGATTGGACCGATGAAGCTATTGAAAAAGGATATGCGGAAGCTGACGGAGCTGTTTCATTTGAAGCTAGGAGAA
ATACGAGGGCATTTATCGTCCTCAGGCTTAACACAAGTGAACCGGTACCATCCTATGAGAAAAAAGCGACTGTTCCCTTT
GAGGCTGTAAAAGATGGAATTGAGATTGAAAGCGTGATGTCAAAGCGGCTTTTCTTTCATATTCCGAAAGGCCGATACAG
CCTTACCTGTTATTCAGTGCCTGCCGAAATATCCGATCTTCATGCGGATACGTATATTATTGATGCAGCCGCAATGTAA

Domains

Predicted by InterproScan.

Competence protein J (ComJ) (ComJ)

(9-129)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nin/comJ Bacillus subtilis subsp. subtilis str. 168

75.758

100

0.758