Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   K6J73_RS02910 Genome accession   NZ_AP018780
Coordinates   585245..585847 (-) Length   200 a.a.
NCBI ID   WP_005626527.1    Uniprot ID   A0ABY1VST8
Organism   Haemophilus influenzae strain CHBN-IV-1 isolate 13H36     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 580245..590847
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K6J73_RS02890 (CHBNIV1_05440) - 580608..582278 (+) 1671 WP_005669262.1 fructose-specific PTS transporter subunit EIIC -
  K6J73_RS02900 (CHBNIV1_05450) secG 582824..583165 (-) 342 WP_005649335.1 preprotein translocase subunit SecG -
  K6J73_RS02905 (CHBNIV1_05460) - 583274..585229 (-) 1956 WP_221253382.1 DNA topoisomerase III -
  K6J73_RS02910 (CHBNIV1_05470) recR 585245..585847 (-) 603 WP_005626527.1 recombination mediator RecR Machinery gene
  K6J73_RS02915 (CHBNIV1_05480) - 585980..586309 (-) 330 WP_005629464.1 YbaB/EbfC family nucleoid-associated protein -
  K6J73_RS02920 (CHBNIV1_05490) - 586468..587313 (-) 846 WP_221253384.1 23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ -
  K6J73_RS02925 (CHBNIV1_05500) - 587386..589980 (-) 2595 WP_221253385.1 penicillin-binding protein 1A -

Sequence

Protein


Download         Length: 200 a.a.        Molecular weight: 22107.23 Da        Isoelectric Point: 6.4843

>NTDB_id=60099 K6J73_RS02910 WP_005626527.1 585245..585847(-) (recR) [Haemophilus influenzae strain CHBN-IV-1 isolate 13H36]
MQSSPLLEHLIENLRCLPGVGPKSAQRMAYHLLQRNRSGGMNLARALTEAMSKIGHCSQCRDFTEEDTCNICNNPRRQNS
GLLCVVEMPADIQAIEQTGQFSGRYFVLMGHLSPLDGIGPREIGLDLLQKRLVEESFHEVILATNPTVEGDATANYIAEM
CRQHNIKVSRIAHGIPVGGELETVDGTTLTHSFLGRRQID

Nucleotide


Download         Length: 603 bp        

>NTDB_id=60099 K6J73_RS02910 WP_005626527.1 585245..585847(-) (recR) [Haemophilus influenzae strain CHBN-IV-1 isolate 13H36]
ATGCAAAGCAGCCCACTTTTAGAACACCTTATTGAAAACTTACGTTGTCTTCCAGGCGTAGGGCCTAAATCTGCGCAACG
TATGGCTTATCATCTTTTACAACGTAATCGTAGCGGTGGAATGAATTTAGCTCGAGCACTCACAGAAGCCATGTCTAAAA
TTGGCCATTGTTCACAATGTCGAGACTTTACGGAAGAAGATACTTGCAACATTTGCAATAATCCACGCCGTCAAAATTCA
GGTTTGCTTTGTGTCGTTGAAATGCCAGCAGATATTCAAGCGATTGAGCAAACAGGGCAATTTTCAGGACGTTATTTTGT
TTTAATGGGACATTTGTCTCCACTTGATGGCATTGGTCCCCGTGAAATTGGTTTAGATTTACTGCAAAAACGCTTAGTAG
AAGAGTCTTTTCACGAAGTAATTCTTGCAACAAATCCAACAGTGGAAGGCGATGCAACGGCAAACTACATCGCTGAAATG
TGCCGCCAGCACAATATCAAAGTGAGTCGTATCGCTCACGGTATCCCTGTCGGTGGTGAACTGGAAACTGTGGACGGCAC
AACGCTTACTCACTCTTTTCTAGGTCGTCGTCAAATCGACTAA

Domains

Predicted by InterProScan.

RecR protein (RecR_ZnF)

(41-77)

Toprim domain (Toprim_4)

(83-172)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Bacillus subtilis subsp. subtilis str. 168

44.221

99.5

0.44
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

43.216

99.5

0.43

Multiple sequence alignment