Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoN/rpoN1   Type   Machinery gene
Locus tag   HU826_RS19255 Genome accession   NZ_CP082280
Coordinates   4099303..4100736 (+) Length   477 a.a.
NCBI ID   WP_088208449.1    Uniprot ID   -
Organism   Enterobacter cancerogenus strain HAEC1     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4094303..4105736
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HU826_RS19225 (HU826_19225) - 4094870..4095847 (+) 978 WP_058609400.1 calcium/sodium antiporter -
  HU826_RS19230 (HU826_19230) kdsD 4095861..4096847 (+) 987 WP_006178784.1 arabinose-5-phosphate isomerase KdsD -
  HU826_RS19235 (HU826_19235) kdsC 4096862..4097428 (+) 567 WP_058609399.1 3-deoxy-manno-octulosonate-8-phosphatase KdsC -
  HU826_RS19240 (HU826_19240) lptC 4097425..4098000 (+) 576 WP_006178786.1 LPS export ABC transporter periplasmic protein LptC -
  HU826_RS19245 (HU826_19245) lptA 4097969..4098523 (+) 555 WP_006178787.1 lipopolysaccharide ABC transporter substrate-binding protein LptA -
  HU826_RS19250 (HU826_19250) lptB 4098530..4099255 (+) 726 WP_006178788.1 LPS export ABC transporter ATP-binding protein -
  HU826_RS19255 (HU826_19255) rpoN/rpoN1 4099303..4100736 (+) 1434 WP_088208449.1 RNA polymerase factor sigma-54 Machinery gene
  HU826_RS19260 (HU826_19260) hpf 4100759..4101046 (+) 288 WP_006178790.1 ribosome hibernation promoting factor -
  HU826_RS19265 (HU826_19265) ptsN 4101129..4101620 (+) 492 WP_006178791.1 PTS IIA-like nitrogen regulatory protein PtsN -
  HU826_RS19270 (HU826_19270) rapZ 4101666..4102520 (+) 855 WP_006178792.1 RNase adapter RapZ -
  HU826_RS19275 (HU826_19275) npr 4102517..4102789 (+) 273 WP_003861872.1 PTS phosphocarrier protein NPr -
  HU826_RS19280 (HU826_19280) mtgA 4102829..4103554 (-) 726 WP_222892264.1 monofunctional biosynthetic peptidoglycan transglycosylase -
  HU826_RS19285 (HU826_19285) elbB 4103551..4104204 (-) 654 WP_088208447.1 isoprenoid biosynthesis glyoxalase ElbB -

Sequence

Protein


Download         Length: 477 a.a.        Molecular weight: 54144.01 Da        Isoelectric Point: 4.3332

>NTDB_id=600989 HU826_RS19255 WP_088208449.1 4099303..4100736(+) (rpoN/rpoN1) [Enterobacter cancerogenus strain HAEC1]
MKQGLQLRLSQQLAMTPQLQQAIRLLQLSTLELQQELQQALDSNPLLEQTDLHDEVDTQQTQDAEMLDTVDALEQKEMPD
ELPLDASWDELYTAGTPSGTRADYQDDELPVYQGETTQSLQDYLMWQVELTPFSDTDRAIATSIVDAVDDTGYLTVTLDD
ILESIGDEDVELEEIEAVLKRIQRFDPVGVAAKDLRDCLLIQLSQFAKETPWIDEARLIISDHLDLLANHDFRSLMRVTR
LKEEVLKEAVNLIQSLDPRPGQSIQTSEPEYVIPDVLVRKHNGRWVVELNSDSIPRLQINQQYASMCTSVRNDSDNQYIR
SNLQEARWLIKSLESRNDTLLRVSRCIVEQQQAFFEQGEEFMKPMVLADIAQAVEMHESTISRVTTQKYLHSPRGIFELK
YFFSSHVNTEGGGEASSTAIRALVKKLIAAENPAKPLSDSKLTTLLSDQGIMVARRTVAKYRESLSIPPSNQRKQLV

Nucleotide


Download         Length: 1434 bp        

>NTDB_id=600989 HU826_RS19255 WP_088208449.1 4099303..4100736(+) (rpoN/rpoN1) [Enterobacter cancerogenus strain HAEC1]
ATGAAGCAAGGTTTGCAATTAAGGCTGAGCCAGCAACTGGCGATGACGCCGCAGCTCCAGCAGGCGATCCGTCTGCTGCA
GCTGTCCACGTTAGAACTTCAGCAGGAGCTCCAGCAGGCGCTGGACAGCAATCCGTTGCTGGAGCAAACCGATCTTCATG
ACGAGGTAGACACCCAGCAAACGCAAGACGCAGAAATGCTCGACACCGTTGATGCGCTCGAACAAAAAGAGATGCCGGAC
GAGCTTCCGCTGGATGCCAGCTGGGATGAACTCTACACCGCCGGTACCCCTTCCGGAACGCGTGCAGACTACCAGGACGA
CGAGCTGCCGGTCTACCAGGGCGAAACCACCCAGTCTCTGCAGGATTACCTGATGTGGCAGGTGGAGCTTACGCCGTTCT
CCGATACCGATCGCGCCATTGCGACCTCCATTGTCGATGCCGTGGATGACACAGGCTATCTGACCGTCACGCTGGACGAC
ATTCTGGAAAGCATCGGCGACGAAGACGTTGAGCTGGAAGAAATTGAAGCCGTGTTAAAGCGCATCCAGCGCTTCGACCC
GGTCGGTGTGGCGGCGAAAGATCTGCGCGACTGCCTGCTGATCCAGCTTTCGCAGTTCGCCAAAGAGACGCCGTGGATTG
ACGAAGCCCGCTTAATCATCAGCGATCATCTGGATCTGCTCGCCAACCATGATTTCCGTTCGCTGATGCGCGTCACGCGT
CTGAAAGAAGAGGTGCTGAAAGAGGCGGTGAATTTAATTCAGTCCCTCGATCCGCGTCCCGGCCAGTCGATCCAGACCAG
CGAACCGGAATACGTGATCCCTGACGTGCTGGTGCGAAAGCATAACGGTCGCTGGGTGGTTGAACTGAATTCAGATAGCA
TCCCTCGTTTGCAAATTAACCAGCAGTACGCCTCCATGTGCACCAGCGTTCGCAACGACTCCGACAATCAATATATTCGT
AGCAACCTTCAGGAAGCGCGATGGTTGATCAAAAGTCTGGAGAGCCGAAATGATACGCTGCTGCGCGTAAGCCGCTGTAT
TGTCGAACAGCAGCAGGCGTTCTTCGAGCAGGGCGAAGAATTTATGAAGCCGATGGTGCTGGCAGATATCGCCCAGGCCG
TCGAGATGCATGAATCAACCATTTCCCGCGTGACCACGCAGAAGTATCTGCACAGTCCGCGCGGTATTTTTGAGCTTAAG
TATTTCTTCTCCAGCCATGTGAATACCGAAGGCGGCGGCGAAGCCTCGTCAACGGCAATCCGTGCACTGGTGAAGAAGTT
GATCGCCGCGGAAAACCCCGCGAAGCCACTGAGCGACAGTAAGTTGACCACCCTTCTCTCCGATCAGGGTATTATGGTGG
CTCGTCGTACCGTTGCGAAGTACCGAGAGTCTTTATCCATTCCGCCGTCTAACCAGCGTAAACAGCTGGTCTGA

Domains

Predicted by InterproScan.

Sigma-54 factor, Activator interacting domain (AID) (Sigma54_AID)

(5-48)

Sigma-54, DNA binding domain (Sigma54_DBD)

(317-475)

Sigma-54 factor, core binding domain (Sigma54_CBD)

(116-303)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoN/rpoN1 Ralstonia pseudosolanacearum GMI1000

45.743

100

0.484