Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEC   Type   Machinery gene
Locus tag   K7I17_RS12965 Genome accession   NZ_CP082279
Coordinates   2516621..2518972 (-) Length   783 a.a.
NCBI ID   WP_014470699.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain Bam1     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2511621..2523972
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K7I17_RS12930 (K7I17_12930) - 2511984..2512322 (-) 339 WP_014470695.1 YqxA family protein -
  K7I17_RS12935 (K7I17_12935) spoIIP 2512339..2513532 (-) 1194 WP_014470696.1 stage II sporulation protein P -
  K7I17_RS12940 (K7I17_12940) gpr 2513600..2514706 (-) 1107 WP_014470697.1 GPR endopeptidase -
  K7I17_RS12945 (K7I17_12945) rpsT 2514909..2515175 (+) 267 WP_003152876.1 30S ribosomal protein S20 -
  K7I17_RS12950 (K7I17_12950) holA 2515198..2516233 (-) 1036 Protein_2529 DNA polymerase III subunit delta -
  K7I17_RS12955 (K7I17_12955) - 2516273..2516427 (-) 155 Protein_2530 hypothetical protein -
  K7I17_RS12960 (K7I17_12960) - 2516468..2516602 (+) 135 WP_003152870.1 YqzM family protein -
  K7I17_RS12965 (K7I17_12965) comEC 2516621..2518972 (-) 2352 WP_014470699.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  K7I17_RS12970 (K7I17_12970) - 2518973..2519542 (-) 570 WP_014470700.1 ComE operon protein 2 -
  K7I17_RS12975 (K7I17_12975) comEA 2519608..2520222 (-) 615 WP_014470701.1 helix-hairpin-helix domain-containing protein Machinery gene
  K7I17_RS12980 (K7I17_12980) comER 2520282..2521103 (+) 822 WP_014470702.1 late competence protein ComER -
  K7I17_RS12985 (K7I17_12985) - 2521172..2521909 (-) 738 WP_014470703.1 class I SAM-dependent methyltransferase -
  K7I17_RS12990 (K7I17_12990) rsfS 2521906..2522262 (-) 357 WP_014470704.1 ribosome silencing factor -
  K7I17_RS12995 (K7I17_12995) yqeK 2522279..2522839 (-) 561 WP_014470705.1 bis(5'-nucleosyl)-tetraphosphatase (symmetrical) YqeK -
  K7I17_RS13000 (K7I17_13000) - 2522829..2523398 (-) 570 WP_014470706.1 nicotinate-nucleotide adenylyltransferase -
  K7I17_RS13005 (K7I17_13005) yhbY 2523409..2523699 (-) 291 WP_014470707.1 ribosome assembly RNA-binding protein YhbY -

Sequence

Protein


Download         Length: 783 a.a.        Molecular weight: 87106.95 Da        Isoelectric Point: 9.3142

>NTDB_id=600946 K7I17_RS12965 WP_014470699.1 2516621..2518972(-) (comEC) [Bacillus amyloliquefaciens strain Bam1]
MKYKYLLLPLAAVSATAGTAAANSFWVLFFFLLYLLFIIVKTKQHTPVIVCLVSFCLYFFLYTVCDAANVSRYQAGSYTE
QALIINIPKVDGAKMSAVIRTHDKEKWAASYKIRSLEEKRLIEQLEPGMRCTFTGSLEQPRHATVPGGFDYKEFLYSQHI
HWIFSVTSIKQCEKSEQPLFKLLNIRKNLISIIRNHVPESSAGIVEALTLGERFSIEDDILSAYQNLGVVHLMAISGMHV
GLITAGLFYALIRIGLTREKAGMLLLLFLPVYTLLSGAAPSVLRASLMLGFYIAGTLLKRSIHSSAALSMSYLLLLLFDP
YLLWQAGFQLSFAVSAALILSSSILKKAGKNRLAGLAMASFIAELSSLPFLLYHFQQISLVSFPMNMVMVPFYTLFVIPF
SVIGFLLLLLSRQAGEFLFYLFDLVMKPVHDFITYAASVDLFTMIASKPDFLSLLMLAVSVFTLFAALEKGGFLKLRKSA
LFFFAVLAYIMFRPYFSPWGEADMLDIGQGDSLFISAPHRKGTVMVDTGGVIAYSEESWKEKHHPYSIGEKVLVPFLNGK
GVKKLDALILTHADQDHIGEAGVLIKKHRVKRLIVPVGFVKEPKDGEILNMAKENNIPVAEAKRGDTITAGDLQFQVLSP
ESPGGRSKNDSSLVLWTVLGRVSWLLTGDLESDGETEVLKTYPNLKADILKAGHHGSKSSTSDAFLKQLQPETALISAGK
DNRYHHPHEEVLDRLKAYSVNVLRTDVSGTIRYRFKKGAGTFSVFPPYDIEETRAQEVKKTAD

Nucleotide


Download         Length: 2352 bp        

>NTDB_id=600946 K7I17_RS12965 WP_014470699.1 2516621..2518972(-) (comEC) [Bacillus amyloliquefaciens strain Bam1]
ATGAAATATAAATACCTTCTTCTGCCTCTGGCGGCGGTTTCTGCAACCGCGGGAACTGCCGCCGCTAATTCCTTCTGGGT
CCTATTCTTTTTCCTTCTGTATCTTCTCTTTATTATCGTAAAAACAAAGCAGCACACACCGGTTATCGTCTGCCTCGTTT
CTTTTTGTCTTTATTTCTTTCTGTATACGGTTTGTGACGCTGCGAATGTATCCCGGTATCAGGCCGGCAGCTATACTGAA
CAGGCTCTCATCATAAACATTCCGAAGGTTGACGGAGCGAAAATGTCAGCCGTTATCCGTACCCATGACAAAGAAAAATG
GGCCGCTTCGTACAAAATCCGGTCCCTTGAAGAAAAAAGACTCATTGAACAGCTGGAACCGGGGATGCGCTGTACGTTTA
CAGGCTCACTGGAACAGCCCCGACATGCGACGGTTCCCGGGGGTTTTGATTATAAGGAATTTCTTTATTCCCAGCATATT
CACTGGATATTTTCCGTTACTTCCATTAAGCAGTGCGAAAAATCCGAACAGCCGCTGTTTAAGCTTCTGAACATCAGAAA
GAATTTGATTTCGATCATTCGGAATCATGTACCTGAATCTTCCGCCGGAATTGTTGAGGCGCTGACCTTAGGTGAAAGAT
TTTCTATAGAGGACGATATACTGAGCGCTTATCAAAATTTGGGAGTCGTTCATTTAATGGCGATTTCCGGAATGCATGTC
GGTCTTATTACGGCGGGGTTATTTTATGCCCTTATCAGAATTGGACTGACAAGAGAAAAGGCGGGGATGTTGTTGCTGCT
TTTTTTGCCGGTGTATACGTTGTTAAGCGGGGCTGCCCCATCTGTGCTGCGCGCATCCCTCATGCTGGGATTTTATATCG
CCGGAACTCTTTTGAAACGCAGCATTCATTCCTCAGCTGCATTGTCCATGTCTTATCTGCTGCTTCTGCTGTTTGATCCT
TACCTCCTTTGGCAGGCGGGCTTCCAGCTTTCCTTTGCGGTAAGCGCCGCTTTAATTCTGTCATCCTCCATTTTAAAGAA
AGCAGGGAAAAACAGACTCGCCGGGCTTGCGATGGCTTCATTTATTGCGGAGCTCAGTTCGCTGCCGTTTCTTCTCTATC
ATTTTCAGCAGATTTCGCTCGTCAGTTTTCCGATGAATATGGTGATGGTGCCATTTTATACGTTATTTGTCATTCCGTTT
TCTGTCATCGGTTTTCTTCTTCTCTTACTTTCCAGGCAGGCGGGGGAATTTTTGTTTTACCTGTTTGATCTTGTGATGAA
GCCTGTGCATGATTTCATTACATATGCGGCATCCGTTGATTTATTTACAATGATTGCGTCAAAGCCTGACTTTCTGTCGC
TTCTTATGCTTGCGGTTTCCGTTTTTACGCTTTTTGCAGCTTTGGAAAAGGGAGGTTTTTTAAAGCTCAGGAAATCGGCT
CTTTTTTTCTTTGCGGTTTTGGCATATATAATGTTCCGTCCTTATTTCAGTCCTTGGGGAGAAGCGGATATGCTTGATAT
CGGGCAGGGAGACTCACTGTTTATAAGTGCCCCGCACCGTAAAGGTACCGTAATGGTTGATACAGGAGGAGTGATTGCTT
ATTCCGAAGAATCGTGGAAAGAAAAACACCACCCGTATTCTATCGGTGAGAAAGTTTTAGTTCCGTTTTTGAACGGAAAA
GGGGTGAAAAAGCTGGATGCGCTGATTTTAACCCATGCGGATCAGGATCATATCGGGGAAGCCGGAGTATTAATCAAAAA
ACATAGAGTGAAGCGGTTAATTGTCCCCGTGGGATTCGTGAAGGAACCGAAGGATGGGGAAATATTGAATATGGCGAAAG
AAAACAACATTCCCGTTGCTGAAGCAAAACGGGGCGATACCATAACAGCCGGTGATCTTCAGTTTCAGGTGCTGTCTCCG
GAGTCGCCTGGCGGAAGGAGTAAAAATGATTCGTCACTGGTGCTTTGGACGGTTTTAGGCAGAGTGAGCTGGCTTTTGAC
GGGAGATTTAGAATCGGACGGCGAAACAGAGGTGCTGAAAACGTATCCGAATCTGAAGGCTGATATATTGAAGGCCGGTC
ATCACGGCAGCAAAAGCTCTACGAGTGACGCCTTTTTGAAACAGCTTCAGCCGGAGACAGCACTGATTTCAGCAGGAAAA
GATAATCGTTATCATCATCCGCATGAAGAAGTGCTGGATCGTTTGAAAGCTTACTCTGTCAATGTGCTTCGCACCGATGT
CAGCGGAACTATTCGATACAGATTTAAAAAAGGCGCCGGAACGTTTTCTGTCTTCCCTCCATATGATATAGAAGAAACCA
GGGCGCAGGAAGTAAAAAAGACTGCCGATTGA

Domains

Predicted by InterproScan.

Competence protein (Competence)

(208-469)

Domain of unknown function (DUF4131) (DUF4131)

(27-171)

Metallo-beta-lactamase superfamily (Lactamase_B)

(508-719)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEC Bacillus subtilis subsp. subtilis str. 168

55.699

98.595

0.549