Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilE   Type   Machinery gene
Locus tag   NDQ69_RS11075 Genome accession   NZ_CP098548
Coordinates   2104943..2105086 (-) Length   47 a.a.
NCBI ID   WP_012503975.1    Uniprot ID   -
Organism   Neisseria gonorrhoeae strain 9343     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2099943..2110086
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NDQ69_RS11055 (NDQ69_11000) pilA 2101187..2102440 (+) 1254 WP_003687004.1 signal recognition particle-docking protein FtsY Machinery gene
  NDQ69_RS11060 (NDQ69_11005) - 2102886..2103587 (-) 702 WP_406946886.1 opacity family porin -
  NDQ69_RS11065 (NDQ69_11905) - 2103588..2103803 (+) 216 WP_263589017.1 hypothetical protein -
  NDQ69_RS11070 (NDQ69_11010) pilE 2104083..2104574 (-) 492 WP_260283796.1 pilin Machinery gene
  NDQ69_RS11075 (NDQ69_11015) pilE 2104943..2105086 (-) 144 WP_012503975.1 hypothetical protein Machinery gene
  NDQ69_RS11080 (NDQ69_11020) - 2105191..2105271 (-) 81 Protein_2141 pilin -
  NDQ69_RS11085 (NDQ69_11025) - 2105389..2105793 (-) 405 Protein_2142 pilin -
  NDQ69_RS11090 (NDQ69_11030) - 2106322..2106735 (-) 414 Protein_2143 pilin -
  NDQ69_RS11095 (NDQ69_11035) lpxC 2106835..2107758 (-) 924 WP_003687007.1 UDP-3-O-acyl-N-acetylglucosamine deacetylase -
  NDQ69_RS11915 - 2108250..2108972 (-) 723 WP_374110874.1 pilin -
  NDQ69_RS11115 (NDQ69_11055) - 2108998..2109213 (-) 216 Protein_2146 pilin -
  NDQ69_RS11120 (NDQ69_11060) - 2109586..2109717 (-) 132 WP_010356054.1 hypothetical protein -

Sequence

Protein


Download         Length: 47 a.a.        Molecular weight: 5048.57 Da        Isoelectric Point: 7.2429

>NTDB_id=600935 NDQ69_RS11075 WP_012503975.1 2104943..2105086(-) (pilE) [Neisseria gonorrhoeae strain 9343]
MTGFNDAAGNEKIDTKHLPSTCRDKSSAVCTKHHAPISNAFQENGAF

Nucleotide


Download         Length: 144 bp        

>NTDB_id=600935 NDQ69_RS11075 WP_012503975.1 2104943..2105086(-) (pilE) [Neisseria gonorrhoeae strain 9343]
ATGACGGGATTTAATGATGCCGCCGGCAACGAAAAAATCGACACCAAGCACCTGCCGTCAACCTGCCGCGATAAATCATC
TGCCGTTTGCACGAAACACCACGCGCCGATTTCAAATGCTTTCCAAGAAAACGGAGCTTTTTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilE Neisseria gonorrhoeae strain FA1090

70

63.83

0.447