Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   K6J73_RS02170 Genome accession   NZ_AP018780
Coordinates   437765..438418 (-) Length   217 a.a.
NCBI ID   WP_014551147.1    Uniprot ID   -
Organism   Haemophilus influenzae strain CHBN-IV-1 isolate 13H36     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 432765..443418
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K6J73_RS02170 (CHBNIV1_04000) sxy/tfoX 437765..438418 (-) 654 WP_014551147.1 DNA transformation protein TfoX Regulator
  K6J73_RS02175 (CHBNIV1_04010) recA 438791..439855 (+) 1065 WP_221253309.1 recombinase RecA Machinery gene
  K6J73_RS02180 (CHBNIV1_04020) recX 439935..440393 (+) 459 WP_044332964.1 recombination regulator RecX -
  K6J73_RS02185 crcB 440390..440776 (-) 387 WP_005694571.1 fluoride efflux transporter CrcB -
  K6J73_RS02190 (CHBNIV1_04040) - 440776..441594 (-) 819 WP_221253310.1 Cof-type HAD-IIB family hydrolase -
  K6J73_RS02195 (CHBNIV1_04050) - 441997..443001 (+) 1005 WP_116946159.1 ornithine carbamoyltransferase -

Sequence

Protein


Download         Length: 217 a.a.        Molecular weight: 25029.43 Da        Isoelectric Point: 10.1071

>NTDB_id=60093 K6J73_RS02170 WP_014551147.1 437765..438418(-) (sxy/tfoX) [Haemophilus influenzae strain CHBN-IV-1 isolate 13H36]
MNIKDEHIESVCSLLDRLVGNVSFKNLFTGYGLFHKEETMFAIWQNKKLYLRGEGVLAIQLTKLGCEPFTTNELNKRFVL
SQYYALSDQVLRSNRLCRKLIILSIKQILEQKLECTLRKLNRLKDLPNLTIKHERALIKVGITNVAMLREIGAENALVEL
KKSGSGATLDFYWKLVCALQNKNSQMLSQAEKERLLKKLNEVLRKNGLKGYRKLDDE

Nucleotide


Download         Length: 654 bp        

>NTDB_id=60093 K6J73_RS02170 WP_014551147.1 437765..438418(-) (sxy/tfoX) [Haemophilus influenzae strain CHBN-IV-1 isolate 13H36]
ATGAATATAAAGGATGAGCATATAGAGAGCGTTTGCTCTTTGTTAGATCGGTTAGTAGGAAATGTTTCCTTTAAAAATCT
TTTTACTGGTTACGGTTTGTTTCACAAGGAAGAGACAATGTTTGCCATTTGGCAAAATAAAAAACTTTATTTACGCGGTG
AGGGTGTTCTCGCAATTCAATTAACTAAATTAGGTTGTGAACCTTTTACAACGAATGAATTAAATAAGCGGTTTGTGCTT
TCACAATATTATGCACTTTCTGATCAGGTTTTACGTAGTAATAGATTGTGTAGAAAATTGATTATTCTTTCTATTAAGCA
GATTCTTGAGCAGAAGCTAGAATGTACGTTAAGAAAATTGAATCGATTAAAGGATTTACCCAATTTAACGATTAAACATG
AAAGAGCTTTAATAAAAGTTGGTATTACAAATGTTGCGATGCTAAGAGAGATTGGCGCAGAAAATGCATTGGTGGAATTA
AAGAAAAGTGGCAGTGGTGCTACGCTTGATTTTTATTGGAAATTAGTATGTGCTTTGCAAAATAAAAATAGTCAGATGTT
AAGTCAAGCTGAAAAAGAGCGTTTATTGAAGAAATTAAACGAAGTTTTGAGAAAAAATGGCTTAAAAGGCTATAGAAAAT
TAGATGATGAATAA

Domains

Predicted by InterProScan.

TfoX C-terminal domain (TfoX_C)

(121-198)

TfoX N-terminal domain (TfoX_N)

(15-107)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Haemophilus influenzae Rd KW20

98.157

100

0.982

Multiple sequence alignment