Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   HK88_RS04825 Genome accession   NC_021823
Coordinates   918968..920212 (+) Length   414 a.a.
NCBI ID   WP_014601987.1    Uniprot ID   A0A3T1H569
Organism   Listeria monocytogenes     
Function   unknown (predicted from homology)   
Unclear

Genomic Context

Location: 913968..925212
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HK88_RS04805 (M642_04905) yfmH 915142..916428 (+) 1287 WP_003732282.1 EF-P 5-aminopentanol modification-associated protein YfmH -
  HK88_RS04810 (M642_04910) ymfI 916520..917251 (+) 732 WP_014601986.1 elongation factor P 5-aminopentanone reductase -
  HK88_RS04815 (M642_04915) - 917302..918231 (+) 930 WP_003732284.1 helix-turn-helix domain-containing protein -
  HK88_RS04820 (M642_04920) pgsA 918321..918899 (+) 579 WP_003723921.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  HK88_RS04825 (M642_04925) cinA 918968..920212 (+) 1245 WP_014601987.1 competence/damage-inducible protein A Machinery gene
  HK88_RS04830 (M642_04930) recA 920485..921531 (+) 1047 WP_003732286.1 recombinase RecA Machinery gene
  HK88_RS04835 (M642_04935) rny 921832..923394 (+) 1563 WP_003721904.1 ribonuclease Y -
  HK88_RS04840 (M642_04940) - 923508..924005 (+) 498 WP_010990112.1 GNAT family N-acetyltransferase -
  HK88_RS04845 (M642_04945) - 924011..924814 (+) 804 WP_003732288.1 TIGR00282 family metallophosphoesterase -
  HK88_RS04850 (M642_04950) - 924831..925193 (+) 363 WP_003744056.1 RicAFT regulatory complex protein RicA family protein -

Sequence

Protein


Download         Length: 414 a.a.        Molecular weight: 45646.85 Da        Isoelectric Point: 4.8669

>NTDB_id=60091 HK88_RS04825 WP_014601987.1 918968..920212(+) (cinA) [Listeria monocytogenes]
MASAEIIAVGTELLLGQIVNSNAAFISQELAADGIYVYHHTVVGDNPTRLKEVIEIAEKRSDILIFTGGLGPTEDDITKQ
ILADHLQKQLVEDEYHMNKINEYFASRNRTMTENNKLQAVIIKDSVVLNNDYGFAAGMYLKENNHTYVLLPGPPSEMKPM
FTKYANPLLLSENGNQNILESKIMRFFGIGESQLAADLNDLIVNQVNPTIATYAGDNEVVVRITATAKTKEEASSLVKDT
EEEILRRDGTFLYGYGEVSLSELVTAMLLEKELTISAAESFTAGLFQAEIAHFPGISKIFKGGMVTYSEETKQSILQVSP
QVIKEKGVVSAECAKEMAENVSRLCKTDIGISFTGVAGPDSLEGHPAGTIWIGLSVKGHETEAFQFVYGRDRNHNRRRAV
KQGFQLIKQFLDAN

Nucleotide


Download         Length: 1245 bp        

>NTDB_id=60091 HK88_RS04825 WP_014601987.1 918968..920212(+) (cinA) [Listeria monocytogenes]
ATGGCAAGTGCAGAAATCATTGCAGTAGGAACTGAACTATTACTTGGGCAAATTGTTAATTCTAATGCTGCGTTTATTTC
ACAAGAATTAGCTGCTGACGGAATATATGTATATCATCATACAGTAGTTGGAGATAATCCAACACGTTTAAAAGAAGTAA
TCGAAATTGCTGAAAAGCGCAGTGATATTTTAATCTTTACTGGGGGACTTGGACCAACTGAAGATGATATAACAAAACAA
ATCTTAGCTGATCATTTACAAAAACAGTTAGTAGAAGATGAATATCATATGAATAAAATTAATGAGTATTTCGCTTCCAG
AAACAGAACCATGACCGAAAACAACAAATTACAAGCGGTTATTATTAAAGATTCCGTGGTATTAAATAATGACTACGGCT
TTGCAGCTGGGATGTACTTAAAAGAAAATAACCATACTTACGTTTTGTTACCAGGACCACCATCTGAAATGAAGCCAATG
TTTACAAAATATGCTAACCCACTTCTTTTAAGTGAAAATGGCAATCAAAATATTTTAGAATCCAAAATCATGCGTTTTTT
TGGTATTGGAGAATCGCAATTAGCTGCTGATTTAAACGATTTGATTGTTAATCAAGTCAACCCAACGATTGCGACATATG
CTGGTGATAATGAAGTCGTGGTTCGTATCACAGCGACAGCTAAAACAAAAGAAGAAGCAAGTTCTCTTGTGAAGGATACA
GAGGAGGAAATATTGCGCCGAGATGGCACTTTTTTATATGGATATGGAGAGGTGTCATTGTCTGAATTAGTTACGGCGAT
GTTACTTGAAAAAGAACTTACCATCTCTGCCGCAGAAAGTTTTACTGCTGGTTTGTTCCAAGCAGAAATTGCCCACTTTC
CTGGCATTTCGAAAATTTTCAAAGGTGGTATGGTGACATACAGTGAAGAAACAAAACAATCTATATTACAAGTATCACCT
CAAGTAATAAAAGAAAAAGGCGTTGTTAGTGCTGAATGTGCGAAGGAAATGGCTGAAAATGTAAGCCGCCTTTGTAAGAC
GGATATTGGAATCAGTTTTACAGGTGTTGCAGGCCCGGATAGTCTAGAAGGCCATCCTGCTGGCACTATTTGGATTGGGC
TGAGCGTTAAAGGTCATGAAACAGAGGCTTTTCAGTTTGTTTATGGAAGAGATCGAAACCATAATCGCCGACGTGCCGTA
AAACAAGGCTTTCAGTTAATTAAGCAATTTTTAGACGCAAATTAG

Domains

Predicted by InterproScan.

Probable molybdopterin binding domain (MoCF_biosynth)

(6-169)

Damage-inducible protein CinA KH domain (CinA_KH)

(181-254)

Competence-damaged protein (CinA)

(259-410)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A3T1H569

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Bacillus subtilis subsp. subtilis str. 168

50.611

98.792

0.5
  cinA Streptococcus mitis SK321

49.165

100

0.498
  cinA Streptococcus pneumoniae TIGR4

48.571

100

0.493
  cinA Streptococcus mitis NCTC 12261

48.449

100

0.49
  cinA Streptococcus pneumoniae Rx1

48.333

100

0.49
  cinA Streptococcus pneumoniae R6

48.333

100

0.49
  cinA Streptococcus mutans UA159

49.029

99.517

0.488
  cinA Streptococcus pneumoniae D39

48.095

100

0.488
  cinA Streptococcus suis isolate S10

38.835

99.517

0.386

Multiple sequence alignment