Detailed information    

insolico Bioinformatically predicted

Overview

Name   comS   Type   Regulator
Locus tag   K7B13_RS20150 Genome accession   NZ_CP082278
Coordinates   380029..380193 (+) Length   54 a.a.
NCBI ID   WP_269387144.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain 35M     
Function   preventing the degradation of ComK (predicted from homology)   
Competence regulation

Genomic Context

Location: 375029..385193
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K7B13_RS20145 srfAB 376920..380012 (+) 3093 Protein_318 surfactin non-ribosomal peptide synthetase SrfAB -
  K7B13_RS20150 comS 380029..380193 (+) 165 WP_269387144.1 competence protein ComS Regulator

Sequence

Protein


Download         Length: 54 a.a.        Molecular weight: 6236.25 Da        Isoelectric Point: 12.3302

>NTDB_id=600898 K7B13_RS20150 WP_269387144.1 380029..380193(+) (comS) [Bacillus amyloliquefaciens strain 35M]
MRARRSSSLNRSDKRLIRSIILFPQHNAGCISSISLGRPARATTSLLYFCWRDR

Nucleotide


Download         Length: 165 bp        

>NTDB_id=600898 K7B13_RS20150 WP_269387144.1 380029..380193(+) (comS) [Bacillus amyloliquefaciens strain 35M]
ATGAGAGCGAGGAGGAGCAGCAGTTTGAACCGATCCGACAAGCGCCTTATCAGAAGCATTATCCTGTTTCCTCAGCACAA
CGCAGGATGTATATCCTCAATCAGCTTGGGCAGGCCAGCACGAGCTACAACGTCCCTGCTGTACTTTTGCTGGAGGGATC
GGTAG

Domains

Predicted by InterproScan.

Bacillus competence protein S (ComS)

(9-52)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comS Bacillus subtilis subsp. subtilis str. 168

60.87

85.185

0.519