Detailed information NTG0600894

Bioinformatically predicted

Overview

• Name: rapF
• Type: Regulator
• Locus tag: K7B13_RS18490
• Genome accession: NZ_CP082278
• Coordinates: 3601152..3602297 (+)
• Length: 381 a.a.
• NCBI ID: WP_212099667.1
• Uniprot ID: -
• Organism: Bacillus amyloliquefaciens strain 35M
• Function: inhibit the DNA-binding function of ComA (predicted from homology) Competence regulation

Genomic Context

Location: 3596152..3607297

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
K7B13_RS18470 (K7B13_18470)	argS	3596795..3598465 (-)	1671	WP_065982573.1	arginine--tRNA ligase	-
K7B13_RS18475 (K7B13_18475)	-	3598462..3598890 (-)	429	WP_212099662.1	DUF1934 domain-containing protein	-
K7B13_RS18480 (K7B13_18480)	-	3599043..3599522 (+)	480	Protein_3615	bacteriocin biosynthesis protein AlbG	-
K7B13_RS18485 (K7B13_18485)	-	3599528..3600922 (-)	1395	WP_212099664.1	YncE family protein	-
K7B13_RS18490 (K7B13_18490)	rapF	3601152..3602297 (+)	1146	WP_212099667.1	tetratricopeptide repeat protein	Regulator
K7B13_RS18495 (K7B13_18495)	-	3602281..3602400 (+)	120	WP_115996635.1	PhrC/PhrF family phosphatase-inhibitory pheromone	-
K7B13_RS18500 (K7B13_18500)	speB	3602534..3603406 (-)	873	WP_065522437.1	agmatinase	-
K7B13_RS18505 (K7B13_18505)	speE	3603465..3604295 (-)	831	WP_013353957.1	spermidine synthase	-
K7B13_RS18510 (K7B13_18510)	-	3604495..3606567 (+)	2073	WP_212099672.1	transglycosylase domain-containing protein	-
K7B13_RS18515 (K7B13_18515)	-	3606592..3607029 (-)	438	WP_212099675.1	hypothetical protein	-

Sequence

Protein

• Length: 381 a.a.
• Molecular weight: 45726.04 Da
• Isoelectric Point: 5.0586

>NTDB_id=600894 K7B13_RS18490 WP_212099667.1 3601152..3602297(+) (rapF) [Bacillus amyloliquefaciens strain 35M]
MASVVSSSAAGEKINEWYMYIRRFSIPDAEYLRREIKEELEHAEDDQDLHLYYSLMEFRHNLMLEYLEPLESQRIEEQPR
LSDLLADIDKKQARLTGRLDYYFNFFRGMYELECREYLSAIQFFKKAESKLTYVTDQIEKAEFYFKMSEVYYYMKQTYVS
MDYARQAYLIYKNGENYSIRLTQCHSLFGANYLDVKQYDHAISHFQKAYTMAELDQQPQLMGRTLFNIALCHNNQNNKDK
AIPHLKKAIDVFEKAQMIHSLPQPYFLLTQIYYKLENIDNAYDYHKKGVSICKEIDDIIYEEKFKFLEYLYTPNPRDILI
NDCLHFLESKLMYADIEELALDVAKYYYTKEEYKKASVYFLKVEEARQQIEGGVNLYEIEV

Nucleotide

• Length: 1146 bp

>NTDB_id=600894 K7B13_RS18490 WP_212099667.1 3601152..3602297(+) (rapF) [Bacillus amyloliquefaciens strain 35M]
GTGGCGAGTGTTGTATCGTCTTCAGCGGCTGGAGAAAAAATCAACGAATGGTATATGTACATTCGAAGGTTCAGCATCCC
GGACGCCGAGTACTTGCGGAGAGAAATCAAAGAAGAGCTTGAGCATGCAGAGGATGATCAGGATCTTCATCTGTACTATT
CTCTCATGGAATTCCGCCACAATCTGATGCTGGAATACCTCGAACCGCTGGAATCGCAGCGGATAGAAGAACAGCCGAGA
CTATCGGATCTGCTCGCGGATATTGATAAAAAGCAGGCCCGGCTGACCGGACGCCTTGATTATTATTTTAATTTTTTCCG
GGGGATGTATGAGCTGGAATGCCGTGAATATCTTTCAGCGATTCAGTTTTTTAAGAAAGCGGAAAGCAAATTGACGTACG
TTACAGATCAGATAGAAAAAGCGGAATTTTACTTTAAGATGTCAGAAGTCTATTACTATATGAAACAAACTTATGTTTCA
ATGGACTATGCGCGGCAAGCTTATTTAATTTATAAAAATGGGGAGAATTATAGCATTAGGTTGACTCAGTGCCATTCTTT
GTTTGGCGCTAATTATCTTGATGTAAAGCAATATGATCATGCGATATCCCACTTTCAAAAAGCATATACGATGGCTGAAC
TGGATCAGCAGCCTCAATTAATGGGGAGAACACTTTTTAACATCGCTTTATGCCATAATAATCAAAACAATAAAGATAAA
GCTATTCCTCATTTAAAAAAAGCCATAGATGTTTTTGAAAAAGCTCAAATGATTCACTCACTTCCGCAGCCCTACTTCTT
ACTTACACAGATTTATTATAAGTTAGAAAATATAGATAACGCGTACGATTATCATAAAAAAGGTGTCTCAATATGTAAGG
AAATAGATGATATAATTTACGAGGAGAAATTTAAATTTTTGGAATATTTATACACGCCGAATCCAAGAGATATATTAATA
AATGATTGTCTGCATTTTCTTGAAAGTAAATTGATGTATGCTGATATTGAGGAATTAGCTCTTGATGTAGCTAAATATTA
TTACACAAAAGAAGAATATAAAAAAGCTTCTGTCTACTTTTTAAAAGTTGAAGAAGCCAGACAGCAGATCGAAGGAGGAG
TGAATTTATATGAAATTGAAGTATAA

Domains

Predicted by InterproScan.

• Tetratricopeptide repeat (TPR_8) (223-251)

• response regulator aspartate phosphatase H, N terminal (RapH_N) (5-65)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rapF	Bacillus subtilis subsp. subtilis str. 168	69.554	100	0.696
rapC	Bacillus subtilis subsp. subtilis str. 168	53.684	99.738	0.535