Detailed information    

insolico Bioinformatically predicted

Overview

Name   degQ   Type   Regulator
Locus tag   K7B13_RS15660 Genome accession   NZ_CP082278
Coordinates   3035428..3035568 (-) Length   46 a.a.
NCBI ID   WP_013353398.1    Uniprot ID   P06532
Organism   Bacillus amyloliquefaciens strain 35M     
Function   modification of regulators (predicted from homology)   
Competence regulation

Genomic Context

Location: 3030428..3040568
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K7B13_RS15640 (K7B13_15640) - 3030800..3032623 (+) 1824 WP_212098274.1 recombinase family protein -
  K7B13_RS15645 (K7B13_15645) - 3032661..3034070 (-) 1410 WP_262388215.1 hypothetical protein -
  K7B13_RS15650 (K7B13_15650) comX 3034204..3034374 (-) 171 WP_212099082.1 competence pheromone ComX -
  K7B13_RS15655 (K7B13_15655) comQ 3034389..3035297 (-) 909 WP_249199260.1 polyprenyl synthetase family protein Regulator
  K7B13_RS15660 (K7B13_15660) degQ 3035428..3035568 (-) 141 WP_013353398.1 degradation enzyme regulation protein DegQ Regulator
  K7B13_RS15665 (K7B13_15665) - 3036033..3036374 (+) 342 WP_115997039.1 hypothetical protein -
  K7B13_RS15670 (K7B13_15670) - 3036380..3037602 (-) 1223 Protein_3054 EAL and HDOD domain-containing protein -
  K7B13_RS15675 (K7B13_15675) - 3037732..3039198 (-) 1467 WP_115997037.1 nicotinate phosphoribosyltransferase -
  K7B13_RS15680 (K7B13_15680) - 3039216..3039767 (-) 552 WP_212099085.1 cysteine hydrolase family protein -
  K7B13_RS15685 (K7B13_15685) - 3039848..3040243 (-) 396 WP_013353403.1 YueI family protein -
  K7B13_RS15690 (K7B13_15690) - 3040309..3040557 (-) 249 WP_013353404.1 YueH family protein -

Sequence

Protein


Download         Length: 46 a.a.        Molecular weight: 5532.37 Da        Isoelectric Point: 6.2567

>NTDB_id=600884 K7B13_RS15660 WP_013353398.1 3035428..3035568(-) (degQ) [Bacillus amyloliquefaciens strain 35M]
MEKKLEEVKQLLFRLENDIRETTDSLRNINKSIDQLDKFSYAMKIS

Nucleotide


Download         Length: 141 bp        

>NTDB_id=600884 K7B13_RS15660 WP_013353398.1 3035428..3035568(-) (degQ) [Bacillus amyloliquefaciens strain 35M]
GTGGAAAAGAAATTAGAAGAAGTAAAGCAATTATTATTCCGACTTGAAAATGATATCAGAGAAACAACCGACTCATTACG
AAACATTAACAAAAGCATTGATCAGCTCGATAAATTCTCATATGCAATGAAAATTTCTTAA

Domains

Predicted by InterproScan.

DegQ (SacQ) family (DegQ)

(1-46)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P06532

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degQ Bacillus subtilis subsp. subtilis str. 168

91.304

100

0.913