Detailed information    

insolico Bioinformatically predicted

Overview

Name   comC   Type   Machinery gene
Locus tag   K7B13_RS12970 Genome accession   NZ_CP082278
Coordinates   2555541..2556293 (-) Length   250 a.a.
NCBI ID   WP_212098562.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain 35M     
Function   processing and translocation of ComGC; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2550541..2561293
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K7B13_RS12945 (K7B13_12945) mreC 2550976..2551839 (-) 864 WP_007408166.1 rod shape-determining protein MreC -
  K7B13_RS12950 (K7B13_12950) mreB 2551870..2552883 (-) 1014 WP_013353062.1 cell shape-determining protein MreB -
  K7B13_RS12955 (K7B13_12955) radC 2552975..2553670 (-) 696 WP_065981989.1 DNA repair protein RadC -
  K7B13_RS12960 (K7B13_12960) - 2553702..2554271 (-) 570 WP_212098556.1 nucleoside triphosphate pyrophosphatase -
  K7B13_RS12965 (K7B13_12965) - 2554413..2555414 (-) 1002 WP_212098559.1 SPOR domain-containing protein -
  K7B13_RS12970 (K7B13_12970) comC 2555541..2556293 (-) 753 WP_212098562.1 A24 family peptidase Machinery gene
  K7B13_RS12975 (K7B13_12975) - 2556431..2557723 (-) 1293 WP_212098564.1 folylpolyglutamate synthase/dihydrofolate synthase family protein -
  K7B13_RS12980 (K7B13_12980) - 2557782..2560424 (-) 2643 WP_212098567.1 valine--tRNA ligase -
  K7B13_RS12985 (K7B13_12985) - 2560875..2561066 (+) 192 WP_013353069.1 hypothetical protein -

Sequence

Protein


Download         Length: 250 a.a.        Molecular weight: 26790.37 Da        Isoelectric Point: 8.7218

>NTDB_id=600877 K7B13_RS12970 WP_212098562.1 2555541..2556293(-) (comC) [Bacillus amyloliquefaciens strain 35M]
MLLILFLLGLIFGSFFYTAACRIPLRISVISPRSSCSFCGLPLSWGELVPVVSYVLQKGRCRNCNGKLSIMYPAAECWTA
CLFTAAGIHFGFSTELLVALLFLSLLMIVTMTDLQYMLIPDKVLLFFLPLLIVGRIFSPLDSWYAGFAGAVCGFFLLIFI
MFVSKGGIGAGDVKLFGVIGLALGVKLVLIAFFLSVIIGAVYGMCAAAGGRLGKKQPFPFAPAIAAGSAVSYLYGDELFS
FYIKLASGGA

Nucleotide


Download         Length: 753 bp        

>NTDB_id=600877 K7B13_RS12970 WP_212098562.1 2555541..2556293(-) (comC) [Bacillus amyloliquefaciens strain 35M]
GTGCTTTTGATTCTGTTTTTGCTCGGTTTGATTTTCGGTTCTTTTTTTTATACAGCAGCGTGCCGTATCCCGCTTCGAAT
CTCGGTTATTTCGCCGCGCTCATCCTGTTCCTTTTGCGGCTTGCCGCTCTCCTGGGGTGAGCTGGTGCCCGTCGTTTCTT
ATGTCCTGCAAAAAGGGAGATGCAGAAACTGCAATGGGAAGCTGTCGATTATGTATCCGGCGGCGGAATGCTGGACGGCA
TGTTTATTTACGGCTGCCGGTATTCATTTCGGTTTCTCAACAGAACTGTTAGTCGCGCTTTTATTTCTGTCTCTATTAAT
GATTGTTACCATGACAGATCTGCAATATATGCTGATTCCTGACAAGGTTCTGCTGTTTTTTCTGCCGCTTCTCATCGTCG
GCCGTATTTTTTCTCCGCTGGATTCATGGTATGCAGGGTTTGCCGGAGCCGTTTGCGGATTTTTTCTGCTTATTTTTATC
ATGTTTGTCAGTAAAGGAGGCATCGGTGCGGGTGATGTGAAACTGTTTGGGGTGATCGGCCTTGCGCTGGGCGTGAAGCT
CGTACTCATTGCATTCTTTCTTTCCGTTATAATCGGAGCCGTATACGGGATGTGCGCCGCAGCGGGCGGCAGGCTTGGAA
AAAAGCAGCCTTTCCCATTTGCGCCTGCCATCGCGGCCGGGAGCGCTGTGAGTTATTTATACGGTGATGAACTGTTTTCG
TTTTACATCAAACTCGCTTCCGGAGGAGCTTGA

Domains

Predicted by InterproScan.

Type IV leader peptidase family (Peptidase_A24)

(101-204)

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(7-90)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comC Bacillus subtilis subsp. subtilis str. 168

59.677

99.2

0.592