Detailed information    

insolico Bioinformatically predicted

Overview

Name   nucA/comI   Type   Machinery gene
Locus tag   K7B13_RS08390 Genome accession   NZ_CP082278
Coordinates   1721019..1721390 (+) Length   123 a.a.
NCBI ID   WP_249199327.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain 35M     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1716019..1726390
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K7B13_RS08385 (K7B13_08385) - 1719455..1720666 (-) 1212 WP_212101423.1 cytochrome P450 -
  K7B13_RS08390 (K7B13_08390) nucA/comI 1721019..1721390 (+) 372 WP_249199327.1 NucA/NucB deoxyribonuclease domain-containing protein Machinery gene
  K7B13_RS08395 (K7B13_08395) - 1721440..1722195 (+) 756 WP_212101429.1 YoaK family protein -
  K7B13_RS08400 (K7B13_08400) - 1722229..1722591 (-) 363 WP_065981515.1 hypothetical protein -
  K7B13_RS08405 (K7B13_08405) - 1722787..1724115 (-) 1329 WP_115997271.1 S8 family peptidase -
  K7B13_RS08410 (K7B13_08410) - 1724299..1724532 (+) 234 WP_014471844.1 hypothetical protein -
  K7B13_RS08415 (K7B13_08415) - 1724787..1725494 (+) 708 WP_212101432.1 poly-gamma-glutamate hydrolase family protein -
  K7B13_RS08420 (K7B13_08420) - 1725555..1726007 (+) 453 WP_212101435.1 OsmC family protein -
  K7B13_RS08425 (K7B13_08425) - 1726021..1726374 (-) 354 WP_249199304.1 multidrug efflux SMR transporter -

Sequence

Protein


Download         Length: 123 a.a.        Molecular weight: 13359.80 Da        Isoelectric Point: 5.5777

>NTDB_id=600859 K7B13_RS08390 WP_249199327.1 1721019..1721390(+) (nucA/comI) [Bacillus amyloliquefaciens strain 35M]
MDAGIHSENTAEAASRYDQVLYFPLLKYPETGNHIKDAISAGHSDICTIDRGGAEHRRKESLKGIPTKPGFDRDEWPMAV
CTEGGAGADIRYVTPSDNRGAGSWVGNQMSGYSDGTRVLFIVQ

Nucleotide


Download         Length: 372 bp        

>NTDB_id=600859 K7B13_RS08390 WP_249199327.1 1721019..1721390(+) (nucA/comI) [Bacillus amyloliquefaciens strain 35M]
ATGGACGCCGGCATCCATTCGGAGAATACTGCTGAAGCTGCGTCCCGATACGATCAGGTGCTGTATTTCCCGCTGTTAAA
ATATCCGGAGACGGGAAATCATATAAAAGACGCCATTTCGGCAGGGCATTCTGACATTTGTACAATTGATCGCGGCGGAG
CTGAGCATAGAAGGAAAGAATCATTGAAAGGCATTCCGACAAAGCCCGGGTTTGACCGTGATGAATGGCCGATGGCAGTC
TGTACGGAAGGCGGGGCAGGGGCTGACATCAGATATGTAACCCCCTCAGATAATCGCGGAGCCGGTTCATGGGTTGGAAA
TCAAATGAGCGGATATTCCGACGGCACGAGAGTATTATTTATCGTTCAGTAA

Domains

Predicted by InterproScan.

Deoxyribonuclease NucA/NucB (DNase_NucA_NucB)

(29-117)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nucA/comI Bacillus subtilis subsp. subtilis str. 168

62.617

86.992

0.545