Detailed information    

insolico Bioinformatically predicted

Overview

Name   recX   Type   Regulator
Locus tag   K7B13_RS04055 Genome accession   NZ_CP082278
Coordinates   838878..839669 (+) Length   263 a.a.
NCBI ID   WP_013351434.1    Uniprot ID   A0AAP7TA01
Organism   Bacillus amyloliquefaciens strain 35M     
Function   inhibit excessive RecA-mediated recombination (predicted from homology)   
Competence regulation

Genomic Context

Location: 833878..844669
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K7B13_RS04030 (K7B13_04030) - 835870..836754 (+) 885 WP_212100695.1 PhzF family phenazine biosynthesis isomerase -
  K7B13_RS04035 (K7B13_04035) - 836831..837415 (+) 585 WP_115998021.1 nitroreductase -
  K7B13_RS04040 (K7B13_04040) - 837456..837647 (-) 192 WP_013351432.1 YfhD family protein -
  K7B13_RS04045 (K7B13_04045) - 837718..837828 (-) 111 WP_003223230.1 YfhE family protein -
  K7B13_RS04050 (K7B13_04050) - 837886..838785 (-) 900 WP_115998020.1 TIGR01777 family oxidoreductase -
  K7B13_RS04055 (K7B13_04055) recX 838878..839669 (+) 792 WP_013351434.1 recombination regulator RecX Regulator
  K7B13_RS04060 (K7B13_04060) - 839676..839990 (+) 315 WP_045507617.1 YfhH family protein -
  K7B13_RS04065 (K7B13_04065) - 840133..841326 (+) 1194 WP_212101647.1 MFS transporter -
  K7B13_RS04070 (K7B13_04070) - 841365..841757 (-) 393 WP_212100697.1 DUF2606 family protein -
  K7B13_RS04075 (K7B13_04075) - 841720..842631 (-) 912 WP_212100699.1 serine protease -
  K7B13_RS04080 (K7B13_04080) - 842769..842921 (-) 153 WP_212100701.1 small, acid-soluble spore protein K -
  K7B13_RS04085 (K7B13_04085) - 843045..843314 (+) 270 WP_013351439.1 YfhJ family protein -
  K7B13_RS04090 (K7B13_04090) - 843446..843973 (+) 528 WP_212100703.1 SH3 domain-containing protein -
  K7B13_RS04095 (K7B13_04095) - 844059..844394 (+) 336 WP_212100706.1 SdpI family protein -

Sequence

Protein


Download         Length: 263 a.a.        Molecular weight: 31009.23 Da        Isoelectric Point: 6.2753

>NTDB_id=600836 K7B13_RS04055 WP_013351434.1 838878..839669(+) (recX) [Bacillus amyloliquefaciens strain 35M]
MPFITKISTQKKNTERFNIFLDEKYAFSVDADVLVRFDLKKGKELDELDILEISHGDEVKKAFNRAVEFLSYRMRSEKEV
RDHLKKKETPEMVISEVIHKLYDYRYLNDKEFAEAYASTHKKTNGKGPDVLFRELKAKGIDDDTIKETLSAFTFDEQIQE
ALKHIGKILKKDKKLSTKEIRQRAQMQLQRKGFPFDVINAALEQTEYENDDEAEMEALKTHAEKAIRKYRYDGSYESGMK
VKQYLFRKGFSIDDIEQFLQEEE

Nucleotide


Download         Length: 792 bp        

>NTDB_id=600836 K7B13_RS04055 WP_013351434.1 838878..839669(+) (recX) [Bacillus amyloliquefaciens strain 35M]
GTGCCGTTTATTACAAAAATATCGACCCAAAAGAAAAATACCGAGCGCTTCAACATCTTTCTTGATGAGAAATATGCATT
CAGCGTCGACGCCGACGTACTTGTTCGTTTTGACCTGAAAAAAGGGAAAGAACTGGATGAGCTTGACATTCTTGAAATCA
GTCACGGCGATGAAGTGAAAAAAGCCTTTAACCGCGCCGTCGAATTTTTATCATACCGGATGCGCTCTGAAAAAGAAGTC
CGGGACCATTTGAAGAAAAAAGAAACACCTGAGATGGTCATTTCTGAAGTCATCCATAAACTGTACGATTACCGCTACTT
AAATGACAAAGAATTTGCCGAAGCCTATGCGAGCACCCACAAAAAAACAAACGGCAAAGGGCCTGACGTCCTGTTTCGCG
AGCTGAAAGCGAAAGGAATAGACGACGATACCATAAAGGAGACGCTCAGTGCGTTTACGTTTGACGAGCAGATACAGGAA
GCGCTGAAACATATCGGGAAAATCCTGAAAAAAGACAAAAAGCTGTCCACAAAAGAGATCAGACAGCGGGCGCAGATGCA
GCTTCAGCGAAAAGGTTTCCCTTTCGACGTCATCAATGCCGCTCTGGAGCAGACGGAGTATGAGAATGATGACGAAGCTG
AGATGGAAGCTTTGAAGACTCATGCGGAAAAAGCAATCAGGAAATACCGCTATGACGGCAGTTATGAAAGCGGAATGAAA
GTCAAGCAGTACTTATTCAGAAAAGGATTCTCGATTGACGACATTGAACAATTTTTGCAGGAAGAGGAGTAA

Domains

Predicted by InterproScan.

RecX family (RecX_HTH2)

(84-206)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recX Bacillus subtilis subsp. subtilis str. 168

79.468

100

0.795