Detailed information NTG0060083

Bioinformatically predicted

Overview

• Name: clpC
• Type: Regulator
• Locus tag: K6J73_RS00705
• Genome accession: NZ_AP018780
• Coordinates: 148898..151468 (-)
• Length: 856 a.a.
• NCBI ID: WP_221253185.1
• Uniprot ID: -
• Organism: Haemophilus influenzae strain CHBN-IV-1 isolate 13H36
• Function: degradation of ComK; degradation of DegU (predicted from homology) Competence regulation

Genomic Context

Location: 143898..156468

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
K6J73_RS00685 (CHBNIV1_01380)	pdxH	143992..144624 (-)	633	WP_044509597.1	pyridoxamine 5'-phosphate oxidase	-
K6J73_RS00690 (CHBNIV1_01390)	-	144817..145524 (+)	708	WP_005648239.1	7-cyano-7-deazaguanine/7-aminomethyl-7- deazaguanine transporter	-
K6J73_RS00695 (CHBNIV1_01410)	rnr	145716..148064 (+)	2349	WP_105197726.1	ribonuclease R	-
K6J73_RS00700 (CHBNIV1_01420)	rlmB	148120..148860 (+)	741	WP_011272250.1	23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB	-
K6J73_RS00705 (CHBNIV1_01430)	clpC	148898..151468 (-)	2571	WP_221253185.1	ATP-dependent chaperone ClpB	Regulator
K6J73_RS00710 (CHBNIV1_01440)	-	151597..152160 (-)	564	WP_221253186.1	5-formyltetrahydrofolate cyclo-ligase	-
K6J73_RS00720 (CHBNIV1_01450)	-	152478..152780 (-)	303	WP_105877876.1	cell division protein ZapA	-
K6J73_RS00725 (CHBNIV1_01460)	polA	152929..155721 (+)	2793	WP_221253187.1	DNA polymerase I	-
K6J73_RS00730	-	155736..155978 (+)	243	Protein_143	serine dehydratase subunit alpha family protein	-

Sequence

Protein

• Length: 856 a.a.
• Molecular weight: 95731.18 Da
• Isoelectric Point: 4.9883

>NTDB_id=60083 K6J73_RS00705 WP_221253185.1 148898..151468(-) (clpC) [Haemophilus influenzae strain CHBN-IV-1 isolate 13H36]
MNIEKFTTKFQEALSEAQSLAIGKDNQFIEPVHLLTALLNQQGGSIAPILTASGVNVALLRNELKTELNKLPQVIGNGGD
IQLSRQLINLLNLCDKFAQQNQDKFISSELFLLAALEERGTISDILKKCGAKKEQISQAIQHIRGGQDVNDQNAEESRQA
LEKYTIDLTARAESGKLDPVIGRDEEIRRAIQVLQRRTKNNPVLIGEPGVGKTAIVEGLAQRIVNGEVPEGLKNKRVLSL
DMGALIAGAKYRGEFEERLKAVLNELSKEEGRVILFIDEIHTMVGAGKTDGAMDAGNLLKPSLARGELHCVGATTLDEYR
QYIEKDAALERRFQKVFVDEPSVEDTIAILRGLKERYEIHHHVDITDPAIVAAATLSHRYISDRQLPDKAIDLIDEAASS
IRMEIDSKPEPLDRLERRIIQLKLEQQALQKEEDEASRKRLEMLEKELVEKEREYAELEEVWKSEKATLSGSQHIKQELD
TAKTELEQARRAGDLAKMSELQYGRIPALEKQLEQAETSEGKEMTLLRYRVTDEEIAEVLSKATGIPVSKMMEGEKEKLL
RMEEELHKRVIGQEEAVDAVANAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELCKTLAKFLFDSEDAMVRIDMSEFMEK
HSVSRLVGAPPGYVGYEEGGYLTEAVRRRPYSVILLDEVEKAHADVFNILLQVLDDGRLTDGQGRTVDFRNTVVIMTSNL
GSDLIQGNKDESYSEMKALVMSVVSQHFRPEFINRIDETVVFHPLGKENIRAIASIQLERLAKRMETRGYELVFTDALLD
FIGEVGYDPIYGARPLKRAIQQEIENSLAQQILSGALLPGKVVTIDYANAEVQARQ

Nucleotide

• Length: 2571 bp

>NTDB_id=60083 K6J73_RS00705 WP_221253185.1 148898..151468(-) (clpC) [Haemophilus influenzae strain CHBN-IV-1 isolate 13H36]
ATGAACATTGAAAAATTTACGACAAAATTCCAAGAAGCGTTAAGCGAAGCACAATCACTTGCTATCGGAAAAGACAATCA
ATTTATTGAACCCGTGCATTTATTGACCGCACTTTTAAATCAACAGGGCGGCTCTATTGCGCCAATTTTGACAGCAAGTG
GTGTAAATGTGGCGTTATTGCGTAATGAATTAAAGACAGAACTAAATAAATTGCCGCAAGTGATTGGCAATGGTGGAGAT
ATACAACTTTCACGCCAGCTTATTAATCTACTTAATTTATGCGATAAATTCGCACAGCAAAACCAAGATAAATTTATTTC
GAGCGAATTGTTTTTGCTTGCAGCTTTAGAAGAACGAGGAACGATCAGCGATATTTTGAAAAAGTGCGGTGCGAAAAAAG
AACAAATTTCGCAAGCTATTCAGCACATTAGAGGGGGACAAGACGTGAACGATCAAAATGCAGAAGAAAGCAGACAAGCT
CTTGAAAAATATACAATTGATTTAACCGCTCGTGCAGAAAGTGGCAAACTTGATCCTGTAATTGGGCGTGATGAAGAAAT
TCGTCGAGCCATTCAAGTATTACAACGTCGTACCAAAAATAACCCTGTGTTAATTGGTGAACCAGGTGTAGGGAAAACGG
CGATTGTCGAAGGCTTGGCACAGCGTATCGTAAACGGCGAAGTGCCAGAAGGTTTGAAAAATAAACGTGTGCTTTCATTA
GATATGGGCGCATTGATTGCTGGTGCAAAATATCGCGGAGAATTTGAAGAACGTTTAAAAGCGGTGCTCAATGAACTTTC
TAAAGAAGAAGGTCGCGTGATCCTCTTTATTGATGAAATTCATACTATGGTCGGCGCGGGTAAAACCGATGGCGCAATGG
ATGCGGGTAACTTGTTAAAACCAAGTTTAGCGCGCGGTGAATTACATTGCGTGGGTGCAACTACTTTAGATGAATATCGT
CAATATATCGAAAAAGATGCCGCACTTGAACGCCGTTTCCAAAAAGTCTTTGTGGACGAACCAAGTGTAGAAGATACCAT
TGCGATCTTACGTGGTTTGAAAGAACGTTATGAAATTCATCATCACGTGGATATTACTGACCCGGCAATTGTCGCTGCAG
CAACGCTTTCACACCGTTATATTTCCGATCGTCAGTTACCAGATAAAGCGATTGATTTGATTGATGAAGCGGCGTCTAGC
ATTCGTATGGAAATAGATTCTAAACCTGAACCGCTTGATCGCCTTGAACGTCGTATTATCCAATTAAAATTGGAACAACA
GGCATTACAAAAAGAAGAAGACGAAGCAAGTCGCAAACGTTTAGAAATGTTAGAGAAAGAATTGGTTGAAAAAGAACGTG
AATATGCCGAACTTGAAGAAGTGTGGAAATCTGAAAAAGCAACGCTTTCTGGCTCTCAACATATTAAACAAGAGTTAGAT
ACTGCAAAAACCGAACTAGAACAAGCTCGTCGCGCGGGTGATTTAGCGAAAATGTCAGAGTTGCAATATGGACGCATCCC
TGCTCTTGAAAAGCAACTTGAGCAAGCTGAAACCAGCGAAGGAAAAGAAATGACACTTTTACGCTATCGCGTCACAGATG
AAGAAATTGCAGAAGTGCTTTCTAAAGCTACAGGCATTCCTGTATCAAAAATGATGGAAGGCGAGAAAGAAAAACTCTTG
CGTATGGAAGAAGAATTGCATAAACGCGTGATCGGTCAAGAAGAAGCAGTTGATGCGGTAGCAAATGCGATTCGTCGTAG
TCGTGCTGGTCTTTCCGATCCTAATCGCCCAATTGGTTCATTCTTGTTCCTAGGGCCAACAGGTGTGGGTAAAACAGAGC
TTTGCAAAACTTTGGCTAAATTCTTGTTTGATAGTGAAGATGCGATGGTGCGCATTGATATGTCAGAGTTTATGGAAAAA
CACAGCGTCTCTCGTTTAGTGGGTGCCCCTCCAGGCTATGTCGGCTATGAAGAAGGCGGTTATTTAACTGAAGCTGTTCG
TCGTCGTCCGTATTCAGTGATTTTGCTCGATGAAGTTGAAAAAGCCCATGCGGATGTATTCAACATTTTATTACAAGTGT
TGGATGATGGTCGTTTGACTGACGGGCAAGGTCGTACTGTGGACTTCCGTAACACGGTTGTAATTATGACCTCTAACTTG
GGTTCTGATTTAATCCAAGGTAATAAAGACGAAAGCTATAGCGAAATGAAAGCCTTAGTGATGTCAGTGGTTAGCCAACA
TTTCCGTCCCGAATTCATCAACCGTATTGACGAAACTGTGGTATTCCATCCGCTTGGTAAAGAGAATATTCGTGCGATTG
CAAGTATCCAATTAGAACGCTTAGCAAAACGTATGGAAACTCGTGGCTATGAATTAGTGTTTACCGACGCTTTATTAGAT
TTCATTGGTGAAGTGGGGTATGACCCAATTTATGGTGCACGTCCATTGAAACGTGCTATTCAACAAGAGATCGAAAACAG
CTTGGCACAACAAATTCTATCTGGTGCGTTATTACCTGGTAAGGTTGTTACCATTGATTACGCCAACGCAGAAGTTCAAG
CTAGACAATAG

Domains

Predicted by InterProScan.

• Clp amino terminal domain, pathogenicity island component (Clp_N) (94-145)

• Clp amino terminal domain, pathogenicity island component (Clp_N) (17-68)

• C-terminal, D2-small domain, of ClpB protein (ClpB_D2-small) (765-845)

• AAA lid domain (AAA_lid_9) (342-443)

• ATPase family associated with various cellular activities (AAA) (AAA) (203-336)

• AAA domain (Cdc48 subfamily) (AAA_2) (596-758)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
clpC	Bacillus subtilis subsp. subtilis str. 168	47.417	100	0.482
clpC	Lactococcus lactis subsp. lactis strain DGCC12653	43.458	100	0.446
clpE	Streptococcus pneumoniae TIGR4	49.12	79.673	0.391
clpE	Streptococcus mutans UA159	48.311	79.556	0.384
clpC	Lactococcus lactis subsp. cremoris KW2	45.326	82.477	0.374
clpE	Streptococcus pneumoniae Rx1	45.428	80.491	0.366
clpE	Streptococcus pneumoniae D39	45.428	80.491	0.366
clpE	Streptococcus pneumoniae R6	45.428	80.491	0.366