Detailed information    

insolico Bioinformatically predicted

Overview

Name   cqsA   Type   Regulator
Locus tag   K6Q96_RS18995 Genome accession   NZ_CP082276
Coordinates   469342..470526 (+) Length   394 a.a.
NCBI ID   WP_251881906.1    Uniprot ID   -
Organism   Grimontia kaedaensis strain 020920N     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 464342..475526
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K6Q96_RS18965 (K6Q96_18925) - 464407..465234 (-) 828 WP_251881900.1 AraC family transcriptional regulator -
  K6Q96_RS18970 (K6Q96_18930) - 465334..465678 (-) 345 WP_062663711.1 hypothetical protein -
  K6Q96_RS18975 (K6Q96_18935) - 465678..465902 (-) 225 WP_251881902.1 hypothetical protein -
  K6Q96_RS18980 (K6Q96_18940) - 466585..467214 (+) 630 WP_251881903.1 class II aldolase/adducin family protein -
  K6Q96_RS18985 (K6Q96_18945) - 467322..467684 (-) 363 WP_251881904.1 DUF4332 domain-containing protein -
  K6Q96_RS18990 (K6Q96_18950) - 468034..469032 (+) 999 WP_251881905.1 alpha/beta hydrolase-fold protein -
  K6Q96_RS18995 (K6Q96_18955) cqsA 469342..470526 (+) 1185 WP_251881906.1 alpha-hydroxyketone-type quorum-sensing autoinducer synthase Regulator
  K6Q96_RS19000 (K6Q96_18960) - 470571..472628 (-) 2058 WP_251881907.1 response regulator -

Sequence

Protein


Download         Length: 394 a.a.        Molecular weight: 43384.26 Da        Isoelectric Point: 4.8649

>NTDB_id=600823 K6Q96_RS18995 WP_251881906.1 469342..470526(+) (cqsA) [Grimontia kaedaensis strain 020920N]
MENQSTITKKLPSFIETRLNSFLRDMTEPYENSRPLPVSSRPGEGSVVMQSNDYLSLSLNDSIQSAHLNAIAASKENVVM
SAVFLQDEDHKPDFENRLADFVGMDGCVLSQSGWAANIGLLQTICEPETRVYIDFFAHMSLWEGARIAGAQIIPFMHNSV
NNLKRQIKKHGAGIILVDSVYSTIGTVAPLPAIYEVAEEFDCALVVDESHSLGTHGPNGSGLINEMGVRDRVDFVSTSLA
KAFAYRAGAVLGPEKLITAMPFVSFPAIFSSTVLPQEIARLDATLDVIRSSDEKRRRLFEISDSLRSGLRNIGFKIRSDS
QIISLECGDEQNTERVRDFLEANGVFGAVFCAPATPKNKAIIRFSLSANMSDLEIDKVLTVCQAAYDRPDLNFY

Nucleotide


Download         Length: 1185 bp        

>NTDB_id=600823 K6Q96_RS18995 WP_251881906.1 469342..470526(+) (cqsA) [Grimontia kaedaensis strain 020920N]
ATGGAAAATCAATCAACTATTACAAAAAAACTCCCTTCTTTTATCGAAACACGTCTCAATTCGTTTTTGCGAGATATGAC
GGAGCCGTATGAAAACTCGCGGCCGCTACCTGTCAGTAGCCGGCCAGGAGAAGGCTCGGTCGTCATGCAAAGTAACGATT
ACCTATCACTGAGTCTGAATGATTCAATTCAATCGGCGCATTTGAATGCCATTGCGGCTTCCAAAGAAAATGTCGTGATG
TCAGCAGTATTTCTTCAGGATGAAGACCATAAACCTGATTTCGAAAATCGTCTTGCTGATTTTGTCGGTATGGACGGCTG
TGTGTTATCTCAATCTGGCTGGGCGGCAAACATAGGTCTGTTGCAAACGATTTGTGAACCTGAAACACGGGTTTATATAG
ATTTCTTTGCGCATATGTCGTTGTGGGAAGGTGCACGTATTGCAGGCGCGCAGATCATCCCTTTTATGCATAACAGTGTG
AATAATCTGAAACGCCAAATTAAAAAGCATGGAGCTGGCATTATCTTGGTGGATTCTGTCTACAGCACCATTGGCACTGT
TGCTCCTCTTCCCGCCATCTACGAAGTGGCTGAAGAGTTCGATTGTGCTTTGGTCGTCGACGAGTCTCACTCACTGGGGA
CGCATGGCCCAAATGGTTCAGGTCTGATCAATGAGATGGGCGTTCGGGACAGGGTAGATTTTGTCTCTACCAGTCTCGCC
AAAGCATTTGCTTACCGCGCAGGCGCAGTTTTAGGGCCGGAGAAACTGATCACTGCAATGCCGTTTGTTTCTTTCCCGGC
CATATTCAGCTCGACAGTATTGCCACAAGAGATTGCGCGCCTGGATGCGACGCTTGATGTAATACGAAGTTCTGATGAAA
AGCGAAGGCGATTATTTGAAATATCAGATTCACTCCGTTCAGGTTTGCGAAATATTGGCTTCAAGATCCGTAGTGATTCG
CAAATCATTTCCCTGGAATGTGGCGATGAACAAAACACTGAGCGTGTTCGTGATTTTCTGGAGGCCAATGGGGTATTTGG
TGCTGTGTTCTGTGCACCAGCAACACCAAAAAACAAAGCCATCATCCGTTTTTCCCTGAGCGCTAACATGAGTGACTTGG
AGATTGATAAAGTGCTGACGGTGTGTCAGGCGGCCTACGATCGGCCTGATCTGAATTTCTACTAA

Domains

Predicted by InterproScan.

Aminotransferase class I and II (Aminotran_1_2)

(50-379)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cqsA Vibrio cholerae strain A1552

51.823

97.462

0.505