Detailed information    

insolico Bioinformatically predicted

Overview

Name   hns   Type   Regulator
Locus tag   K6I41_RS17760 Genome accession   NZ_CP082274
Coordinates   3747350..3747676 (-) Length   108 a.a.
NCBI ID   WP_002053185.1    Uniprot ID   A0A0A7XV72
Organism   Acinetobacter sp. AS23     
Function   repress the expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 3742350..3752676
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K6I41_RS17740 (K6I41_17615) - 3742460..3743089 (-) 630 WP_013199108.1 FHA domain-containing protein -
  K6I41_RS17745 (K6I41_17620) gspD 3743129..3745396 (-) 2268 WP_005301716.1 type II secretion system secretin GspD -
  K6I41_RS17750 (K6I41_17625) - 3745438..3746274 (-) 837 WP_250374874.1 type II secretion system protein N -
  K6I41_RS17755 (K6I41_17630) gspN 3746274..3747017 (-) 744 WP_250374875.1 type II secretion system protein N -
  K6I41_RS17760 (K6I41_17635) hns 3747350..3747676 (-) 327 WP_002053185.1 H-NS histone family protein Regulator
  K6I41_RS17765 (K6I41_17640) - 3747871..3748311 (-) 441 WP_198308297.1 thioesterase family protein -
  K6I41_RS17770 (K6I41_17645) - 3748319..3749512 (-) 1194 WP_005301703.1 hypothetical protein -
  K6I41_RS17775 (K6I41_17650) - 3749522..3750364 (-) 843 WP_198308296.1 hypothetical protein -
  K6I41_RS17780 (K6I41_17655) - 3750373..3751140 (-) 768 WP_151826358.1 uroporphyrinogen-III synthase -
  K6I41_RS17785 (K6I41_17660) hemC 3751144..3752061 (-) 918 WP_250374876.1 hydroxymethylbilane synthase -

Sequence

Protein


Download         Length: 108 a.a.        Molecular weight: 12478.12 Da        Isoelectric Point: 5.0524

>NTDB_id=600776 K6I41_RS17760 WP_002053185.1 3747350..3747676(-) (hns) [Acinetobacter sp. AS23]
MKPDISELSVEELKRLQEEAEALIASKKDQAIEDAYNQIIEIAENVGFSVEQLLEFGAQKRKKTTRKSVEPRYRNKNNSE
ETWTGRGKQPRWLVAEIEKGAKLEDFLI

Nucleotide


Download         Length: 327 bp        

>NTDB_id=600776 K6I41_RS17760 WP_002053185.1 3747350..3747676(-) (hns) [Acinetobacter sp. AS23]
ATGAAACCGGATATCAGTGAATTATCTGTTGAAGAGTTAAAACGCTTACAAGAAGAAGCGGAAGCTTTAATTGCAAGTAA
AAAAGATCAAGCAATCGAAGATGCTTATAATCAAATTATCGAAATCGCTGAAAATGTAGGTTTTAGTGTTGAACAACTTC
TTGAGTTTGGTGCTCAAAAACGTAAGAAAACAACACGTAAATCTGTTGAGCCACGTTACCGCAACAAAAACAATTCTGAA
GAGACTTGGACTGGCCGTGGTAAACAACCACGCTGGTTAGTTGCTGAAATTGAAAAAGGCGCAAAACTTGAAGATTTCTT
AATCTAA

Domains

Predicted by InterproScan.

H-NS histone family (Histone_HNS)

(12-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0A7XV72

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  hns Acinetobacter baumannii strain A118

99.074

100

0.991