Detailed information    

insolico Bioinformatically predicted

Overview

Name   priA   Type   Machinery gene
Locus tag   K6I41_RS17235 Genome accession   NZ_CP082274
Coordinates   3634040..3636268 (+) Length   742 a.a.
NCBI ID   WP_250374842.1    Uniprot ID   A0AAJ1PFI6
Organism   Acinetobacter sp. AS23     
Function   DNA puliing through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3629040..3641268
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K6I41_RS17205 (K6I41_17090) lnt 3629134..3630693 (+) 1560 WP_250374839.1 apolipoprotein N-acyltransferase -
  K6I41_RS17210 (K6I41_17095) - 3630695..3631033 (-) 339 WP_192835780.1 tRNA-binding protein -
  K6I41_RS17215 (K6I41_17100) - 3631277..3631537 (+) 261 WP_250374840.1 DUF2798 domain-containing protein -
  K6I41_RS17220 (K6I41_17105) - 3631602..3631946 (-) 345 WP_250374841.1 hypothetical protein -
  K6I41_RS17225 (K6I41_17110) gspG 3632216..3632665 (-) 450 WP_167317673.1 type II secretion system major pseudopilin GspG -
  K6I41_RS17230 (K6I41_17115) gspF 3632686..3633891 (-) 1206 WP_005301929.1 type II secretion system inner membrane protein GspF -
  K6I41_RS17235 (K6I41_17120) priA 3634040..3636268 (+) 2229 WP_250374842.1 primosomal protein N' Machinery gene
  K6I41_RS17240 (K6I41_17125) - 3636345..3638189 (+) 1845 WP_192834273.1 monovalent cation:proton antiporter-2 (CPA2) family protein -
  K6I41_RS17245 (K6I41_17130) hslO 3638353..3639228 (+) 876 WP_005301920.1 Hsp33 family molecular chaperone HslO -
  K6I41_RS17250 (K6I41_17135) - 3639364..3639975 (+) 612 WP_005301917.1 LysE family translocator -
  K6I41_RS17255 (K6I41_17140) - 3640122..3641078 (+) 957 WP_250374843.1 DnaJ C-terminal domain-containing protein -

Sequence

Protein


Download         Length: 742 a.a.        Molecular weight: 84070.98 Da        Isoelectric Point: 8.7607

>NTDB_id=600773 K6I41_RS17235 WP_250374842.1 3634040..3636268(+) (priA) [Acinetobacter sp. AS23]
MTITPKPDSVVYRVRVAVPVHLYDTFDYTLTQAQYERAHVGSRVAISFGRQNLIGIITEKVNPHEPFTGKFQLKAISELL
DEEPILDEQVLSLLTWSAQYYQFPIGEVMQTALPALLRQGKPMDVLFHLWKITPCDNVDALLKRSVKQQDAYQILKLHPA
GTTENILNLSGVETATLKALQKKGLVDCTLEPHDFSPTPVQLAQMPLTLNEDQKKATQHVVNAQHQYQAFLLDGLTGSGK
TEVYLHIMHEVLKQGKQVLVLVPEIGLTPQTISRFKSRFNCDIALLHSGLNDSKRLQAWQQAQTGKASIILGTRSAIYTP
LPRLGLIILDEEHDLSYKQQEGFRYHARDVALYRGHLQSCPVILGSATPSIDSYYLVETGKLTALQLNKRAGHALLPKMH
LIDLKIVKKQHGISQPLIEQIKHTLARKEQVLIFLNRRGYAPVLVCESCGWQANCPHCDAHFTLHTQPYSYLHCHHCGTI
HRLPDHCPECQQKSLKTLGAGTAKVEEHLQELFPDHDVIRVDRDSTSRVGSWQKIYDRIHQNKPTILLGTQMLAKGHHFP
HVTLVAILDIDAGLLSVDIRAPERTAQLIVQVAGRAGRGEHKGHVYLQTLRPDHPLLTTLIEKDYRAVAKQTLAERKVAL
LPPYRYAVLIRAESKDRDYTLQFLNEAAEQLRQVAGEIVDIWGPIPAPMERKAGRYRAHMVILSADRARLHFYLRQWWSQ
LVHAPRQHQLRLSIDVDPQEFN

Nucleotide


Download         Length: 2229 bp        

>NTDB_id=600773 K6I41_RS17235 WP_250374842.1 3634040..3636268(+) (priA) [Acinetobacter sp. AS23]
ATGACCATAACGCCAAAGCCAGATTCAGTTGTTTATCGTGTGCGTGTAGCCGTACCTGTGCATCTGTACGACACTTTTGA
CTATACACTCACCCAAGCACAATATGAACGGGCTCACGTAGGCTCACGCGTCGCTATTTCATTTGGGCGCCAAAACCTGA
TTGGCATCATTACAGAAAAAGTAAATCCACATGAGCCATTTACAGGTAAATTTCAGCTTAAAGCCATTTCTGAACTTTTA
GATGAAGAACCAATTTTAGATGAACAAGTTTTAAGTTTATTGACATGGTCCGCGCAATATTACCAATTTCCAATTGGTGA
AGTTATGCAAACTGCCCTACCCGCGTTATTGCGTCAGGGCAAACCGATGGATGTTTTGTTCCATCTTTGGAAAATCACAC
CCTGTGACAATGTTGACGCCCTGCTAAAACGTTCTGTTAAGCAACAAGATGCGTATCAAATTTTAAAATTACACCCTGCT
GGAACTACAGAAAATATTCTCAATTTAAGTGGCGTAGAAACAGCAACGCTTAAAGCACTTCAAAAGAAAGGACTGGTTGA
CTGCACGCTCGAACCACATGACTTTAGCCCCACACCTGTTCAATTGGCACAAATGCCGCTCACCCTCAATGAAGACCAAA
AGAAAGCAACTCAGCACGTCGTAAATGCACAGCATCAATACCAAGCCTTTTTGCTAGATGGTTTAACAGGAAGTGGTAAA
ACCGAAGTTTATCTGCACATCATGCACGAGGTGCTAAAGCAAGGTAAACAAGTACTGGTGTTAGTACCTGAAATTGGTTT
AACCCCTCAAACGATTTCCCGTTTTAAGTCTCGTTTTAACTGTGATATTGCTTTATTGCACTCTGGCTTAAATGATTCCA
AACGCTTACAAGCATGGCAACAGGCACAGACTGGAAAAGCGTCTATTATTTTAGGAACGCGCTCTGCCATCTATACGCCA
TTGCCACGTTTGGGCCTCATCATTTTAGATGAAGAGCACGACCTGTCTTATAAACAGCAAGAAGGCTTCCGATATCATGC
GCGTGATGTCGCACTGTACCGCGGTCACTTGCAAAGCTGCCCTGTTATTTTAGGGTCGGCAACTCCAAGTATTGATAGTT
ATTATTTAGTCGAAACTGGCAAATTAACTGCACTGCAACTCAACAAACGTGCTGGACATGCACTTTTGCCTAAAATGCAT
TTGATTGACCTTAAAATTGTCAAAAAACAGCATGGAATCAGCCAGCCTCTTATTGAACAAATCAAGCATACATTAGCTAG
AAAAGAACAGGTTTTAATCTTTTTAAACCGTCGTGGCTATGCACCTGTACTGGTTTGTGAAAGCTGTGGATGGCAAGCAA
ATTGTCCACATTGCGACGCGCATTTTACTTTACACACTCAGCCTTATTCTTATTTACACTGCCATCACTGCGGAACCATT
CATCGCTTACCCGATCATTGCCCTGAATGTCAGCAAAAAAGCTTAAAAACTTTAGGTGCAGGAACCGCTAAGGTTGAAGA
GCACTTACAAGAACTATTTCCAGATCATGATGTCATTCGGGTCGATCGTGACAGTACCAGTCGTGTCGGAAGCTGGCAAA
AAATCTATGACCGTATTCATCAAAACAAACCAACAATTTTACTCGGCACTCAAATGTTGGCAAAAGGCCATCATTTTCCA
CATGTCACATTAGTTGCCATTTTAGATATTGATGCAGGTTTACTCAGTGTAGACATCCGTGCACCAGAACGTACGGCGCA
GCTGATTGTACAAGTCGCTGGTCGTGCAGGTCGTGGTGAACACAAAGGCCATGTTTATTTACAAACCTTAAGACCTGATC
ATCCACTACTCACCACACTCATCGAAAAAGATTATCGCGCGGTTGCCAAACAAACGCTGGCTGAACGTAAAGTAGCTTTG
CTGCCACCTTATCGTTATGCAGTTTTAATTCGTGCAGAATCTAAAGATCGTGACTATACCTTACAATTTTTAAATGAAGC
TGCCGAGCAACTTCGTCAAGTCGCTGGTGAGATTGTTGATATTTGGGGACCTATTCCAGCGCCGATGGAACGTAAAGCGG
GGCGCTACCGTGCCCACATGGTGATTTTATCTGCTGACCGTGCTCGCCTACATTTTTACTTAAGACAATGGTGGTCTCAA
TTGGTTCATGCACCAAGACAGCATCAACTCAGGCTATCAATTGATGTCGATCCGCAAGAATTTAATTAG

Domains

Predicted by InterproScan.

Type III restriction enzyme, res subunit (ResIII)

(208-370)

3DNA-binding domain (3BD) (PriA_3primeBD)

(15-114)

Primosomal protein N C-terminal domain (PriA_C)

(643-738)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  priA Acinetobacter baumannii D1279779

96.9

100

0.969