Detailed information    

insolico Bioinformatically predicted

Overview

Name   tonB2   Type   Machinery gene
Locus tag   K6I41_RS02400 Genome accession   NZ_CP082274
Coordinates   489968..490852 (+) Length   294 a.a.
NCBI ID   WP_250375135.1    Uniprot ID   -
Organism   Acinetobacter sp. AS23     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 484968..495852
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K6I41_RS02375 (K6I41_02365) - 485282..486529 (-) 1248 WP_016140126.1 YihY family inner membrane protein -
  K6I41_RS02380 (K6I41_02370) wrbA 486890..487498 (+) 609 WP_023274375.1 NAD(P)H:quinone oxidoreductase -
  K6I41_RS02385 (K6I41_02375) - 487546..488121 (-) 576 WP_004789579.1 xanthine phosphoribosyltransferase -
  K6I41_RS02390 (K6I41_02380) - 488193..488906 (-) 714 WP_004789577.1 DUF3108 domain-containing protein -
  K6I41_RS02395 (K6I41_02385) - 489064..489735 (-) 672 WP_250375134.1 hypothetical protein -
  K6I41_RS02400 (K6I41_02390) tonB2 489968..490852 (+) 885 WP_250375135.1 TonB family protein Machinery gene
  K6I41_RS02405 (K6I41_02395) ybeY 490954..491436 (-) 483 WP_004789571.1 rRNA maturation RNase YbeY -
  K6I41_RS02410 (K6I41_02400) - 491446..492534 (-) 1089 WP_004789570.1 PhoH family protein -
  K6I41_RS02415 (K6I41_02405) miaB 492572..494023 (-) 1452 WP_005301343.1 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB -

Sequence

Protein


Download         Length: 294 a.a.        Molecular weight: 33622.13 Da        Isoelectric Point: 9.1627

>NTDB_id=600754 K6I41_RS02400 WP_250375135.1 489968..490852(+) (tonB2) [Acinetobacter sp. AS23]
MLNKRSLSIEPFYHWWQDRVFIAATILAILLHVFVLLIHFAMPSPSEQSTKEIAISIRSSNEPVQQADFLAQADQQGSGT
FREAHRTSSDTPNLMPNDASTGNAELESLQKVQQQRELKFEEKVLMTVLSWQKQADASQRKKELEQLQSQFQAKAAMVAS
LEAQYLQRRQDFSRQQKIKTVDGIQAKKDASAAYLDKFREKVELYGNRYYPEEAKQQQLRGEVRLMVILNAQGGIRAIRL
LESSGHSILDEAAKSSVRRGAPFGHFDANMKDISELRIVRTWRFDPAQAEFEVH

Nucleotide


Download         Length: 885 bp        

>NTDB_id=600754 K6I41_RS02400 WP_250375135.1 489968..490852(+) (tonB2) [Acinetobacter sp. AS23]
ATGTTGAACAAAAGAAGTCTATCCATAGAGCCTTTTTACCATTGGTGGCAAGACCGAGTCTTTATTGCTGCAACAATATT
AGCAATCTTACTGCATGTTTTTGTGTTGCTCATCCACTTTGCCATGCCTAGCCCATCAGAGCAATCTACTAAAGAAATTG
CAATTTCAATTCGATCAAGCAATGAGCCAGTTCAGCAGGCAGATTTTTTAGCACAAGCGGACCAGCAGGGTTCGGGCACA
TTTCGTGAAGCCCATCGGACCTCTAGTGATACTCCAAATCTGATGCCTAATGATGCTTCAACTGGAAATGCAGAGTTAGA
AAGTTTGCAAAAGGTTCAGCAACAAAGAGAGCTTAAATTTGAAGAAAAAGTCTTAATGACTGTTTTGAGTTGGCAAAAAC
AAGCTGATGCGAGTCAAAGGAAAAAAGAACTAGAACAATTACAAAGTCAATTTCAGGCAAAAGCTGCGATGGTGGCGAGT
CTTGAAGCACAATATTTACAACGTAGACAAGATTTCAGTCGGCAACAAAAAATCAAAACAGTAGATGGAATTCAAGCGAA
GAAAGATGCTTCGGCTGCTTATTTAGATAAGTTCCGTGAAAAAGTAGAGTTGTATGGTAATCGCTATTATCCAGAAGAAG
CCAAACAACAACAACTAAGAGGTGAAGTCCGTTTAATGGTGATTTTGAATGCTCAAGGCGGAATTCGTGCAATTCGATTA
CTTGAAAGCTCAGGGCATTCAATACTAGATGAAGCAGCTAAGTCTTCAGTACGTCGCGGCGCACCATTTGGGCATTTCGA
TGCCAATATGAAAGATATTTCTGAATTACGTATTGTACGTACGTGGCGTTTCGATCCGGCTCAAGCAGAATTTGAAGTAC
ATTAA

Domains

Predicted by InterproScan.

Gram-negative bacterial TonB protein C-terminal (TonB_C)

(207-284)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  tonB2 Acinetobacter baumannii D1279779

88.095

100

0.881