Detailed information    

insolico Bioinformatically predicted

Overview

Name   cqsA   Type   Regulator
Locus tag   HK86_RS20845 Genome accession   NC_021821
Coordinates   1154474..1155655 (-) Length   393 a.a.
NCBI ID   WP_020841997.1    Uniprot ID   -
Organism   Vibrio parahaemolyticus O1:Kuk str. FDA_R31     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1149474..1160655
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HK86_RS20830 (M634_21390) - 1150776..1151324 (+) 549 WP_005486527.1 GNAT family N-acetyltransferase -
  HK86_RS20835 (M634_21395) - 1151411..1152028 (-) 618 WP_005481262.1 HAD family phosphatase -
  HK86_RS20840 (M634_21400) cqsS 1152348..1154396 (+) 2049 WP_020841996.1 response regulator Regulator
  HK86_RS20845 (M634_21405) cqsA 1154474..1155655 (-) 1182 WP_020841997.1 alpha-hydroxyketone-type quorum-sensing autoinducer synthase Regulator
  HK86_RS20850 (M634_21410) ylqF 1156011..1156955 (-) 945 WP_017448150.1 ribosome biogenesis GTPase YlqF -
  HK86_RS20855 (M634_21420) - 1157659..1158051 (-) 393 WP_020841999.1 LysR substrate-binding domain-containing protein -
  HK86_RS20860 (M634_21425) - 1158041..1159148 (-) 1108 Protein_1012 IS3 family transposase -
  HK86_RS20870 (M634_21435) - 1159195..1160052 (+) 858 Protein_1013 Na+/H+ antiporter NhaA -

Sequence

Protein


Download         Length: 393 a.a.        Molecular weight: 43787.16 Da        Isoelectric Point: 6.6825

>NTDB_id=60075 HK86_RS20845 WP_020841997.1 1154474..1155655(-) (cqsA) [Vibrio parahaemolyticus O1:Kuk str. FDA_R31]
MCTKNETKPLPSFIEERLNFHIQDLIKSNENQKHLVLGKRPSENAVVMQSNDYLSLSQNELIQKAHRDAISERDDNVVMS
AIFLQDDQSKPAFEHQLATFVGMESCLLSQSGWAANIGLLQTICAPNVPVYIDFFAHMSLWEGARTAGAQIHPFMHNNMN
HLRKQIQRHGAGIIVVDSVYSTIGTISPLRAIYEMAKEFDCGLVVDESHSLGTHGPKGSGLLQELGLTQMVDFVTVSLAK
TFAYRAGAILGPNKLAQSLPFVAYPAIFSSTVLPQEVVRLEKTLEVIKAADDKRECLFKRAKELAIGLKRIGFKIRSESQ
IIALECGSERNTERVRDFLEERGVFGAVFCRPATGRNKNIIRFSVNADMTAQQVDHVLSACQEAFDHPDLEFV

Nucleotide


Download         Length: 1182 bp        

>NTDB_id=60075 HK86_RS20845 WP_020841997.1 1154474..1155655(-) (cqsA) [Vibrio parahaemolyticus O1:Kuk str. FDA_R31]
ATGTGTACTAAAAACGAAACTAAACCACTGCCCTCTTTTATCGAGGAACGCCTTAATTTCCATATTCAAGATTTAATTAA
ATCTAATGAAAATCAAAAGCACCTCGTTCTTGGCAAACGACCGTCCGAAAATGCCGTGGTAATGCAAAGCAATGATTACC
TTTCCCTCTCTCAAAATGAGCTCATTCAGAAAGCGCATCGAGATGCAATTTCTGAACGAGATGACAATGTCGTGATGTCG
GCAATCTTCTTACAAGATGACCAATCAAAACCCGCCTTTGAGCACCAGCTGGCGACGTTTGTCGGCATGGAAAGTTGTTT
GTTGTCACAATCAGGATGGGCAGCCAATATTGGTTTACTGCAAACCATCTGCGCGCCAAACGTCCCCGTATACATCGACT
TTTTCGCTCATATGTCGTTGTGGGAAGGAGCACGCACCGCTGGAGCGCAGATTCATCCTTTCATGCACAACAACATGAAT
CATCTGCGCAAGCAGATCCAACGCCACGGTGCGGGAATCATCGTTGTCGATTCGGTGTATAGCACGATTGGCACAATCTC
CCCGTTACGTGCCATCTACGAAATGGCGAAGGAGTTTGATTGTGGCTTAGTGGTAGATGAATCTCATTCATTAGGCACAC
ACGGACCAAAGGGGTCTGGATTATTACAAGAACTGGGACTAACACAGATGGTGGATTTCGTTACCGTAAGTTTGGCGAAA
ACGTTCGCCTACCGCGCTGGTGCGATTTTAGGCCCGAACAAGCTAGCACAATCGCTGCCCTTCGTGGCCTATCCTGCGAT
TTTTAGCTCAACGGTTTTGCCGCAAGAAGTCGTGCGTCTAGAAAAAACACTTGAGGTAATTAAAGCGGCTGACGACAAAC
GTGAATGTTTGTTCAAGCGAGCCAAAGAACTCGCCATCGGATTAAAACGTATTGGGTTTAAAATTCGCAGCGAATCGCAG
ATTATTGCTCTTGAGTGTGGAAGTGAGAGAAACACTGAACGAGTACGAGACTTTCTTGAAGAAAGAGGCGTTTTCGGTGC
GGTGTTTTGCCGACCTGCCACGGGCAGAAACAAGAACATCATTCGATTTTCTGTCAATGCCGACATGACAGCTCAACAAG
TGGATCACGTCTTATCGGCTTGTCAGGAGGCATTTGACCATCCCGACTTAGAATTTGTGTAA

Domains

Predicted by InterproScan.

Aminotransferase class I and II (Aminotran_1_2)

(45-379)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cqsA Vibrio cholerae strain A1552

58.656

98.473

0.578

Multiple sequence alignment