Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilE   Type   Machinery gene
Locus tag   NDQ68_RS11070 Genome accession   NZ_CP098542
Coordinates   2105368..2105511 (-) Length   47 a.a.
NCBI ID   WP_012503975.1    Uniprot ID   -
Organism   Neisseria gonorrhoeae strain 10704     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2100368..2110511
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NDQ68_RS11050 (NDQ68_10960) pilA 2101746..2102999 (+) 1254 WP_003687004.1 signal recognition particle-docking protein FtsY Machinery gene
  NDQ68_RS11055 (NDQ68_11820) - 2103115..2103255 (-) 141 WP_179133147.1 hypothetical protein -
  NDQ68_RS11060 (NDQ68_11825) - 2103269..2103982 (-) 714 WP_229931770.1 opacity family porin -
  NDQ68_RS11065 (NDQ68_10980) pilE 2104495..2105001 (-) 507 WP_267696237.1 pilin Machinery gene
  NDQ68_RS11070 (NDQ68_11830) pilE 2105368..2105511 (-) 144 WP_012503975.1 hypothetical protein Machinery gene
  NDQ68_RS11080 (NDQ68_10985) - 2105814..2106158 (-) 345 Protein_2137 pilin -
  NDQ68_RS11085 (NDQ68_10990) - 2106152..2106550 (-) 399 Protein_2138 pilin -
  NDQ68_RS11090 (NDQ68_10995) pilE 2107062..2107478 (-) 417 WP_229931784.1 pilin Machinery gene
  NDQ68_RS11095 (NDQ68_11000) lpxC 2107584..2108507 (-) 924 WP_003687007.1 UDP-3-O-acyl-N-acetylglucosamine deacetylase -
  NDQ68_RS11925 - 2109031..2109753 (-) 723 WP_411268511.1 pilin -
  NDQ68_RS11115 (NDQ68_11020) - 2109779..2109994 (-) 216 Protein_2142 pilin -
  NDQ68_RS11120 (NDQ68_11025) - 2110367..2110498 (-) 132 WP_010356054.1 hypothetical protein -

Sequence

Protein


Download         Length: 47 a.a.        Molecular weight: 5048.57 Da        Isoelectric Point: 7.2429

>NTDB_id=600722 NDQ68_RS11070 WP_012503975.1 2105368..2105511(-) (pilE) [Neisseria gonorrhoeae strain 10704]
MTGFNDAAGNEKIDTKHLPSTCRDKSSAVCTKHHAPISNAFQENGAF

Nucleotide


Download         Length: 144 bp        

>NTDB_id=600722 NDQ68_RS11070 WP_012503975.1 2105368..2105511(-) (pilE) [Neisseria gonorrhoeae strain 10704]
ATGACGGGATTTAATGATGCCGCCGGCAACGAAAAAATCGACACCAAGCACCTGCCGTCAACCTGCCGCGATAAATCATC
TGCCGTTTGCACGAAACACCACGCGCCGATTTCAAATGCTTTCCAAGAAAACGGAGCTTTTTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilE Neisseria gonorrhoeae strain FA1090

70

63.83

0.447