Detailed information    

insolico Bioinformatically predicted

Overview

Name   rec2   Type   Machinery gene
Locus tag   K7B08_RS05755 Genome accession   NZ_CP082272
Coordinates   1147634..1150027 (-) Length   797 a.a.
NCBI ID   WP_170345804.1    Uniprot ID   A0AAW8V452
Organism   Pasteurella multocida strain 17BRD-035     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Prophage 1100165..1152355 1147634..1150027 within 0


Gene organization within MGE regions


Location: 1100165..1152355
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K7B08_RS05445 - 1100165..1101574 (-) 1410 WP_156732267.1 type II and III secretion system protein family protein -
  K7B08_RS05450 - 1101574..1102365 (-) 792 WP_156732268.1 flp operon protein C -
  K7B08_RS05455 - 1102526..1102873 (-) 348 WP_014668273.1 Mor transcription activator family protein -
  K7B08_RS05460 - 1102873..1103334 (-) 462 WP_223132114.1 gp16 family protein -
  K7B08_RS05465 - 1103406..1103726 (-) 321 WP_223132115.1 hypothetical protein -
  K7B08_RS05470 - 1103730..1104290 (-) 561 WP_223132116.1 DUF5420 family protein -
  K7B08_RS05475 - 1104300..1104845 (-) 546 WP_223132117.1 hypothetical protein -
  K7B08_RS05480 - 1104842..1105069 (-) 228 WP_223132118.1 hypothetical protein -
  K7B08_RS05485 - 1105070..1105237 (-) 168 WP_014668268.1 hypothetical protein -
  K7B08_RS05490 - 1105239..1105859 (-) 621 WP_223132119.1 DUF3164 family protein -
  K7B08_RS05495 - 1105879..1106133 (-) 255 WP_223132155.1 hypothetical protein -
  K7B08_RS05500 - 1106108..1106329 (-) 222 WP_223132120.1 hypothetical protein -
  K7B08_RS05505 - 1106339..1106662 (-) 324 WP_005755630.1 hypothetical protein -
  K7B08_RS05510 - 1106665..1107843 (-) 1179 WP_115173352.1 AAA family ATPase -
  K7B08_RS05515 - 1107855..1109624 (-) 1770 WP_223132121.1 DDE-type integrase/transposase/recombinase -
  K7B08_RS05520 - 1109636..1110580 (-) 945 WP_223132122.1 hypothetical protein -
  K7B08_RS05525 - 1110591..1110905 (-) 315 WP_223132123.1 IclR family transcriptional regulator -
  K7B08_RS05530 - 1110918..1111103 (-) 186 WP_223132124.1 hypothetical protein -
  K7B08_RS05535 - 1111113..1111304 (-) 192 WP_113027616.1 DNA-binding protein -
  K7B08_RS05540 - 1111396..1111761 (+) 366 WP_223132125.1 helix-turn-helix domain-containing protein -
  K7B08_RS05545 - 1111779..1112015 (+) 237 WP_223132126.1 hypothetical protein -
  K7B08_RS05550 - 1112145..1113122 (+) 978 WP_223132127.1 hypothetical protein -
  K7B08_RS05555 - 1113187..1113570 (-) 384 WP_223132128.1 hypothetical protein -
  K7B08_RS05560 - 1113754..1114119 (+) 366 WP_223132129.1 putative holin -
  K7B08_RS05565 - 1114121..1114717 (+) 597 WP_223132130.1 transglycosylase SLT domain-containing protein -
  K7B08_RS05570 - 1114708..1115151 (+) 444 WP_250003309.1 hypothetical protein -
  K7B08_RS05575 - 1115248..1115598 (+) 351 WP_005755594.1 hypothetical protein -
  K7B08_RS05580 - 1115600..1115905 (+) 306 WP_005755593.1 hypothetical protein -
  K7B08_RS05585 - 1115917..1116459 (+) 543 WP_113027620.1 DUF3486 family protein -
  K7B08_RS05590 - 1116459..1118021 (+) 1563 WP_223132131.1 terminase large subunit domain-containing protein -
  K7B08_RS05595 - 1118024..1119547 (+) 1524 WP_223132132.1 DUF935 domain-containing protein -
  K7B08_RS05600 - 1119531..1120769 (+) 1239 WP_223132133.1 PBECR2 nuclease fold domain-containing protein -
  K7B08_RS05605 - 1120866..1121357 (+) 492 WP_104884406.1 phage virion morphogenesis protein -
  K7B08_RS05610 - 1121584..1122585 (+) 1002 WP_223132134.1 peptidase -
  K7B08_RS05615 - 1122582..1122947 (+) 366 WP_223132135.1 capsid cement protein -
  K7B08_RS05620 - 1123008..1123931 (+) 924 WP_113027627.1 phage capsid protein -
  K7B08_RS05625 - 1123941..1124447 (+) 507 WP_104884410.1 gp436 family protein -
  K7B08_RS05630 - 1124447..1124893 (+) 447 WP_223132136.1 hypothetical protein -
  K7B08_RS05635 - 1124890..1125150 (+) 261 WP_113027629.1 hypothetical protein -
  K7B08_RS05640 - 1125143..1125889 (+) 747 WP_223132137.1 hypothetical protein -
  K7B08_RS05645 - 1125950..1126375 (+) 426 WP_223132138.1 DUF6631 family protein -
  K7B08_RS05650 - 1126585..1126800 (-) 216 WP_083004282.1 hypothetical protein -
  K7B08_RS05655 - 1126813..1130157 (+) 3345 WP_223132139.1 tape measure protein -
  K7B08_RS05660 - 1130166..1131161 (+) 996 WP_223132140.1 hypothetical protein -
  K7B08_RS05665 - 1131164..1132123 (+) 960 WP_223132141.1 hypothetical protein -
  K7B08_RS05670 - 1132131..1133813 (+) 1683 WP_223132142.1 phage tail protein -
  K7B08_RS05675 - 1133838..1134647 (+) 810 WP_115173371.1 phage BR0599 family protein -
  K7B08_RS05680 - 1134664..1134915 (+) 252 WP_005755565.1 hypothetical protein -
  K7B08_RS05685 - 1134919..1135128 (+) 210 WP_223132143.1 hypothetical protein -
  K7B08_RS05690 - 1135121..1137910 (+) 2790 WP_223132144.1 phage tail protein -
  K7B08_RS05695 - 1137979..1138203 (+) 225 WP_113027638.1 hypothetical protein -
  K7B08_RS05700 - 1138361..1138951 (+) 591 WP_376750191.1 hypothetical protein -
  K7B08_RS05705 - 1139280..1139699 (-) 420 WP_156732269.1 prepilin peptidase -
  K7B08_RS05710 - 1139804..1140034 (-) 231 WP_059245973.1 Flp family type IVb pilin -
  K7B08_RS05725 pgsA 1141339..1141896 (-) 558 WP_005751628.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  K7B08_RS05730 uvrC 1141992..1143818 (-) 1827 WP_156732580.1 excinuclease ABC subunit UvrC -
  K7B08_RS05735 kdsB 1143852..1144628 (-) 777 WP_005756949.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  K7B08_RS05740 - 1144630..1144812 (-) 183 WP_005716837.1 Trm112 family protein -
  K7B08_RS05745 lpxK 1144824..1145801 (-) 978 WP_156732270.1 tetraacyldisaccharide 4'-kinase -
  K7B08_RS05750 msbA 1145833..1147581 (-) 1749 WP_005716843.1 lipid A ABC transporter ATP-binding protein/permease MsbA -
  K7B08_RS05755 rec2 1147634..1150027 (-) 2394 WP_170345804.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  K7B08_RS05760 dksA 1150324..1150761 (+) 438 WP_005716860.1 RNA polymerase-binding protein DksA -
  K7B08_RS05765 pcnB 1150850..1152355 (+) 1506 WP_005756954.1 polynucleotide adenylyltransferase PcnB -

Sequence

Protein


Download         Length: 797 a.a.        Molecular weight: 91006.40 Da        Isoelectric Point: 9.8259

>NTDB_id=600716 K7B08_RS05755 WP_170345804.1 1147634..1150027(-) (rec2) [Pasteurella multocida strain 17BRD-035]
MKNALLSMSVVTVFSACSLLWLPEHFLLHWHMTLLVFALLLVSIIICVLCGKNHWISPLIFVMSSVGILGYIHDQARQTL
LQADLVAQLPRKIETEFKIIEVLQQKNYQTFVVSAQLSPQQAKQKMILQWHAQEKAQIGEIWKGELRLRPISSRLNMGGF
DKQQWYFAKGITAYATVKSAVKISEQLSWREKWLREGVKQTMQLEYQGLLLALAFGERAWLPTNIWQTYQKTSTAHVIAI
SGLHIGLAMGIGYFFIRLIQFLLPLKWVTPTLPIIVGLLFAWFYAELAGFSIPTSRAFFALTVVSWVKLWRRSYSVWQFF
LLVVALLLLGEPCMVLSSSFWLSVSAVSVLMLWYQIFPLSLLHWRGKKITESPWRNCRWFFSLLHLQLGLLWLFTPVQLL
LFQGIALTSFMANVLVVPIYSVILIPLILLAVITQGAFSSWSIANTVAKYVTMLLTPLQSHWVVFSQQEILCLIAILALT
FIILIWYLYDLKKESLKCYAKVPRFFHLNQMRLLNPSLKWKTYLLAVGISLYCFLQILYKEISQPLWRLDTLDVGQGLAN
LIVVNGKGVLYDTGASWAGGSMAELEIIPYLQREGIELEQVILSHDDNDHVGGAETILKHYPQAKLMTASAQNYGKTDRT
FCEAGKTWTWQLLTFKALSPTKIVKRAKNTDSCVLLISDGSHHILLTGDADIAAEKQFVNQLSQLDVLQVGHHGSKTSTG
YELLYQTRPKIALISSGRWNPWQFPHVQVVQRLKRYQTAVYNTGELGQISLLFHAKHIEIQTARTDFSPWYRRLIGL

Nucleotide


Download         Length: 2394 bp        

>NTDB_id=600716 K7B08_RS05755 WP_170345804.1 1147634..1150027(-) (rec2) [Pasteurella multocida strain 17BRD-035]
ATGAAAAACGCTCTTTTGTCAATGTCTGTCGTGACCGTATTCAGCGCCTGTTCGTTACTTTGGCTACCTGAACATTTCTT
GCTACATTGGCACATGACATTGTTAGTCTTCGCATTATTGCTAGTCAGCATAATCATCTGTGTTCTTTGTGGCAAAAATC
ACTGGATTTCGCCTCTGATCTTTGTAATGAGTTCAGTAGGCATTTTAGGCTATATTCATGATCAAGCTCGTCAGACATTA
TTGCAAGCGGACTTGGTTGCTCAACTGCCTCGAAAGATAGAGACAGAATTTAAAATCATTGAAGTATTACAACAAAAAAA
CTATCAAACTTTTGTGGTTTCTGCACAATTGTCTCCGCAACAAGCAAAACAAAAAATGATTCTTCAATGGCACGCGCAAG
AAAAGGCACAGATAGGGGAGATTTGGAAAGGAGAACTACGGCTCAGACCGATTTCATCAAGGCTCAATATGGGCGGTTTT
GATAAACAGCAATGGTATTTCGCCAAAGGCATTACCGCTTATGCAACGGTAAAAAGTGCGGTCAAAATAAGTGAACAGTT
ATCTTGGCGAGAAAAATGGTTGCGAGAGGGAGTGAAACAGACCATGCAGCTGGAATATCAAGGTCTGTTACTTGCGCTGG
CTTTTGGTGAACGGGCATGGTTACCCACAAACATTTGGCAAACTTATCAAAAAACCAGCACAGCACATGTGATTGCGATA
TCGGGTTTACATATTGGGCTTGCGATGGGAATAGGTTATTTCTTTATCCGTTTAATTCAGTTCCTATTGCCATTAAAGTG
GGTGACACCGACCTTGCCAATCATTGTTGGGCTTCTTTTTGCATGGTTTTATGCTGAGTTGGCGGGCTTTAGTATTCCAA
CATCACGCGCGTTTTTTGCTTTAACTGTCGTGTCGTGGGTAAAACTTTGGCGGCGTTCTTATTCTGTTTGGCAATTTTTT
TTATTAGTTGTTGCTTTGTTATTGCTAGGTGAACCATGTATGGTTTTATCGAGCAGTTTCTGGCTGTCGGTTAGTGCTGT
GAGTGTATTAATGCTTTGGTATCAAATTTTTCCGCTGTCTTTATTACATTGGCGAGGAAAAAAGATCACAGAGAGTCCTT
GGCGCAACTGTCGTTGGTTCTTTAGTCTTCTTCATTTACAACTTGGCTTATTGTGGCTTTTTACTCCCGTTCAATTATTG
CTTTTTCAGGGAATAGCTTTAACGAGCTTTATGGCGAATGTGCTTGTGGTGCCTATTTATAGTGTGATTTTAATACCATT
GATTTTATTGGCGGTGATCACTCAAGGGGCATTTTCCTCTTGGTCTATTGCAAATACTGTTGCGAAATACGTCACGATGC
TTTTAACTCCATTACAATCTCATTGGGTTGTATTCTCACAGCAGGAAATACTCTGCCTGATCGCGATCTTAGCTTTAACT
TTTATTATATTGATTTGGTATCTCTATGATTTAAAAAAAGAATCACTGAAGTGCTACGCTAAAGTACCACGTTTTTTTCA
TCTTAATCAAATGCGGCTGTTAAATCCGTCTTTAAAATGGAAAACTTATTTACTCGCTGTTGGCATCAGTCTTTACTGTT
TCTTACAGATACTTTATAAGGAGATATCTCAACCGCTTTGGCGTTTAGATACGCTCGATGTTGGACAAGGGTTAGCTAAC
TTGATTGTCGTGAATGGGAAAGGGGTTTTGTATGATACGGGGGCGTCTTGGGCGGGAGGAAGTATGGCGGAACTGGAAAT
TATACCCTATTTACAAAGAGAGGGGATTGAGTTAGAACAGGTGATTTTAAGCCATGATGATAATGATCATGTTGGGGGCG
CGGAAACAATTCTAAAACATTACCCTCAAGCGAAGCTGATGACGGCGTCTGCTCAAAATTACGGAAAAACTGACCGCACT
TTTTGTGAAGCTGGTAAAACCTGGACTTGGCAACTCTTAACATTCAAAGCCCTTTCACCGACTAAAATAGTGAAGCGAGC
GAAAAATACGGACTCTTGTGTGTTACTGATCTCAGATGGTTCTCATCATATCCTCTTAACTGGTGATGCAGATATTGCTG
CGGAAAAGCAGTTTGTGAATCAGTTAAGTCAACTTGATGTGTTACAAGTTGGACATCATGGCAGTAAAACGTCAACAGGG
TATGAACTTCTTTATCAAACACGACCAAAAATCGCACTGATTTCAAGTGGTCGTTGGAATCCATGGCAATTTCCACATGT
TCAGGTTGTACAACGACTTAAACGTTATCAAACGGCTGTATATAACACTGGTGAGTTAGGACAAATTAGCTTACTTTTTC
ATGCTAAACACATCGAGATTCAAACCGCAAGAACGGATTTTTCGCCTTGGTATCGTAGATTAATTGGCTTGTAA

Domains

Predicted by InterproScan.

Competence protein (Competence)

(213-487)

Metallo-beta-lactamase superfamily (Lactamase_B)

(554-736)

Domain of unknown function (DUF4131) (DUF4131)

(30-180)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rec2 Haemophilus influenzae Rd KW20

51.818

96.612

0.501