Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   K4042_RS07210 Genome accession   NZ_CP082269
Coordinates   1514803..1515432 (+) Length   209 a.a.
NCBI ID   WP_222890072.1    Uniprot ID   -
Organism   Enterobacter sp. C2     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 1509803..1520432
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K4042_RS07190 - 1510184..1511944 (-) 1761 WP_222890071.1 Lon protease family protein -
  K4042_RS07195 matP 1512130..1512582 (+) 453 WP_042392481.1 macrodomain Ter protein MatP -
  K4042_RS07200 ompA 1512660..1513721 (-) 1062 WP_144812867.1 porin OmpA -
  K4042_RS07205 sulA 1514076..1514585 (-) 510 WP_222890581.1 SOS-induced cell division inhibitor SulA -
  K4042_RS07210 sxy/tfoX 1514803..1515432 (+) 630 WP_222890072.1 TfoX/Sxy family DNA transformation protein Regulator
  K4042_RS07215 yccS 1515417..1517549 (-) 2133 WP_222890073.1 YccS family putative transporter -
  K4042_RS07220 - 1517569..1518012 (-) 444 WP_144812857.1 YccF domain-containing protein -
  K4042_RS07225 helD 1518136..1520190 (+) 2055 WP_222890074.1 DNA helicase IV -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 23996.62 Da        Isoelectric Point: 9.4316

>NTDB_id=600643 K4042_RS07210 WP_222890072.1 1514803..1515432(+) (sxy/tfoX) [Enterobacter sp. C2]
MKNVSYQRIYQSREYLSSLGHIRHRALFGGYSLAIEDTVFAMVAEGALYLRACEESASYCVNTQAPFLTFVKRGRPVLLN
YYRVDDSLWQDRETLLTLGNYSLAAARREKVARYAQKRLRDLPNLNFQLETLLWEAGVKDEHSLKLLGAKACWLRLKERS
PLLSIRVLFALEGAIAGLHEAALPAEIRRELTVWYKELEAESRVNQRGT

Nucleotide


Download         Length: 630 bp        

>NTDB_id=600643 K4042_RS07210 WP_222890072.1 1514803..1515432(+) (sxy/tfoX) [Enterobacter sp. C2]
ATGAAAAACGTATCGTATCAAAGGATCTATCAATCTCGGGAATATCTTTCGTCGCTGGGACATATTCGCCACCGCGCACT
GTTTGGTGGTTACAGCCTCGCCATAGAAGATACCGTCTTTGCCATGGTTGCCGAAGGGGCGCTCTACCTGCGTGCTTGTG
AAGAGAGTGCCTCCTACTGTGTCAACACGCAGGCCCCGTTCCTGACCTTTGTGAAGCGGGGCAGGCCGGTGCTGCTTAAC
TACTACCGGGTCGATGATAGCCTGTGGCAGGATCGCGAAACGCTGCTCACGCTGGGCAACTACTCTCTGGCGGCAGCGCG
GCGCGAAAAGGTCGCAAGGTATGCGCAAAAGCGGCTCAGAGATCTGCCCAACCTGAATTTTCAGCTGGAGACGCTGCTGT
GGGAAGCGGGCGTTAAGGATGAACACAGCCTGAAGCTGCTGGGAGCGAAGGCATGCTGGCTCAGGTTAAAGGAGCGCAGC
CCGCTGCTGAGTATCCGGGTGCTGTTTGCGCTGGAAGGGGCCATCGCTGGCCTGCATGAGGCCGCGCTCCCGGCAGAAAT
ACGCCGGGAGCTGACCGTCTGGTATAAAGAGCTGGAGGCAGAGAGCCGTGTAAATCAGCGGGGAACCTGA

Domains

Predicted by InterproScan.

TfoX C-terminal domain (TfoX_C)

(116-194)

TfoX N-terminal domain (TfoX_N)

(14-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

56.061

94.737

0.531