Detailed information    

insolico Bioinformatically predicted

Overview

Name   rapF   Type   Regulator
Locus tag   K4A81_RS19140 Genome accession   NZ_CP082262
Coordinates   3848701..3849846 (+) Length   381 a.a.
NCBI ID   WP_099721980.1    Uniprot ID   A0AAP3YDZ8
Organism   Bacillus velezensis strain BIM B-454D     
Function   inhibit the DNA-binding function of ComA (predicted from homology)   
Competence regulation

Genomic Context

Location: 3843701..3854846
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K4A81_RS19120 (K4A81_19120) - 3844175..3844891 (-) 717 WP_014306017.1 Crp/Fnr family transcriptional regulator -
  K4A81_RS19125 (K4A81_19125) narK 3844989..3846179 (-) 1191 WP_103526558.1 nitrate transporter NarK -
  K4A81_RS19130 (K4A81_19130) argS 3846314..3847984 (-) 1671 WP_222885039.1 arginine--tRNA ligase -
  K4A81_RS19135 (K4A81_19135) - 3847981..3848409 (-) 429 WP_014419128.1 DUF1934 domain-containing protein -
  K4A81_RS19140 (K4A81_19140) rapF 3848701..3849846 (+) 1146 WP_099721980.1 tetratricopeptide repeat protein Regulator
  K4A81_RS19145 (K4A81_19145) - 3849830..3849949 (+) 120 WP_021494790.1 PhrC/PhrF family phosphatase-inhibitory pheromone -
  K4A81_RS19150 (K4A81_19150) - 3850147..3850350 (+) 204 WP_003151064.1 helix-turn-helix transcriptional regulator -
  K4A81_RS19155 (K4A81_19155) - 3850364..3850567 (+) 204 WP_007407641.1 hypothetical protein -
  K4A81_RS19160 (K4A81_19160) - 3850602..3850787 (+) 186 WP_007407642.1 DUF4177 domain-containing protein -
  K4A81_RS19165 (K4A81_19165) - 3850974..3851255 (+) 282 WP_007407643.1 hypothetical protein -
  K4A81_RS19170 (K4A81_19170) - 3851299..3851811 (+) 513 WP_007614439.1 stage II sporulation protein M -
  K4A81_RS19175 (K4A81_19175) - 3852402..3852620 (-) 219 WP_202729332.1 LuxR C-terminal-related transcriptional regulator -
  K4A81_RS19180 (K4A81_19180) speB 3852789..3853661 (-) 873 WP_222885040.1 agmatinase -
  K4A81_RS19185 (K4A81_19185) speE 3853720..3854550 (-) 831 WP_003151052.1 spermidine synthase -

Sequence

Protein


Download         Length: 381 a.a.        Molecular weight: 45567.62 Da        Isoelectric Point: 4.5769

>NTDB_id=600591 K4A81_RS19140 WP_099721980.1 3848701..3849846(+) (rapF) [Bacillus velezensis strain BIM B-454D]
MASVLSSSAVGEKINEWYMYIRRFSIPDAEYLRREIKEELAGLEDDQDLHLYYSLMEFRHNLMLEYLEPLESQRIEEQPR
LSDLLADIDKKQARLTGRLDYYFNFFRGMYELECREYLSAIQFFKKAEYKLDFVKDCIEKAEFYFKMSESYYYMKQTYFS
MDYARQAYKIYHKQEAYNIRVLQCHSLFATNFLDLKQYDEAIQHFKKAYAMAEAEQQPQLMGRTLYNIGLCFNSQENYKP
AIDYIKRAIAVFEDGNIITSLPQAYFLITQIHYKIGNTAIARQYHDKGVSYAEEAEDSLYIVEYEFLESLYVGEPDEEAI
MECFDFLRDKLMYADLEDFALDVAKYYHERENFEKASAYFLKVEETRQQIQGGVKLYEIEV

Nucleotide


Download         Length: 1146 bp        

>NTDB_id=600591 K4A81_RS19140 WP_099721980.1 3848701..3849846(+) (rapF) [Bacillus velezensis strain BIM B-454D]
GTGGCGAGTGTTTTATCGTCTTCAGCGGTTGGAGAAAAAATCAACGAATGGTATATGTACATTCGAAGGTTCAGCATCCC
GGACGCCGAGTACTTGCGGAGAGAAATCAAAGAAGAACTTGCAGGTCTGGAAGATGATCAGGATCTTCATCTATACTATT
CTCTCATGGAATTCCGCCACAATCTGATGCTCGAATACCTCGAACCGCTGGAATCGCAGCGGATAGAAGAACAGCCGAGA
CTATCGGATCTGCTCGCGGATATTGATAAAAAGCAGGCCCGGCTGACCGGACGTCTTGATTATTATTTTAATTTTTTCCG
GGGGATGTATGAGCTGGAATGCCGTGAATATCTTTCAGCGATTCAGTTTTTTAAGAAAGCTGAATATAAGCTTGATTTTG
TCAAAGATTGTATCGAGAAAGCTGAATTTTATTTTAAGATGTCAGAGTCCTACTATTATATGAAACAGACTTATTTTTCT
ATGGATTATGCCCGGCAGGCTTATAAAATTTATCATAAGCAGGAGGCATATAATATAAGGGTGCTTCAGTGCCATTCATT
GTTCGCTACCAACTTTCTTGACTTAAAGCAATATGATGAAGCAATTCAGCATTTTAAAAAAGCTTATGCCATGGCAGAGG
CAGAACAGCAGCCTCAATTAATGGGCCGGACTCTATATAATATCGGACTTTGTTTTAACAGCCAAGAAAATTACAAACCA
GCCATTGACTACATAAAACGGGCAATAGCTGTTTTTGAAGATGGGAACATCATCACTTCTCTCCCGCAAGCCTATTTCTT
AATCACACAAATACATTATAAAATCGGAAATACGGCCATAGCCAGACAATATCATGACAAAGGGGTATCTTATGCAGAGG
AGGCAGAAGATTCCCTATATATAGTCGAGTATGAATTTTTAGAATCTTTATATGTCGGTGAGCCTGATGAAGAAGCAATC
ATGGAATGTTTTGACTTTCTCAGAGATAAATTGATGTATGCTGATCTTGAAGATTTTGCCTTAGATGTGGCAAAATATTA
TCATGAAAGAGAAAATTTCGAGAAGGCTTCCGCATATTTTTTAAAGGTGGAAGAAACAAGACAGCAGATTCAAGGAGGTG
TGAAGTTGTATGAAATTGAAGTATAA

Domains

Predicted by InterproScan.

response regulator aspartate phosphatase H, N terminal (RapH_N)

(5-65)

Tetratricopeptide repeat (TPR_12)

(189-253)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rapF Bacillus subtilis subsp. subtilis str. 168

78.478

100

0.785
  rapC Bacillus subtilis subsp. subtilis str. 168

56.842

99.738

0.567